4cv7: Difference between revisions

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 ==Crystal structure of Rhodococcus equi VapB==
-<StructureSection load='4cv7' size='340' side='right' caption='[[4cv7]], [[Resolution|resolution]] 1.40&Aring;' scene=''>
+<StructureSection load='4cv7' size='340' side='right'caption='[[4cv7]], [[Resolution|resolution]] 1.40&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[4cv7]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_hoagii"_morse_1912 "bacillus hoagii" morse 1912]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4CV7 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4CV7 FirstGlance]. <br>
+<table><tr><td colspan='2'>[[4cv7]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Rhodococcus_equi Rhodococcus equi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4CV7 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4CV7 FirstGlance]. <br>
-</td></tr><tr><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CO:COBALT+(II)+ION'>CO</scene><br>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.4&#8491;</td></tr>
-<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4cv7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4cv7 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4cv7 RCSB], [http://www.ebi.ac.uk/pdbsum/4cv7 PDBsum]</span></td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CO:COBALT+(II)+ION'>CO</scene></td></tr>
-<table>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4cv7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4cv7 OCA], [https://pdbe.org/4cv7 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4cv7 RCSB], [https://www.ebi.ac.uk/pdbsum/4cv7 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4cv7 ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/B4F366_RHOHA B4F366_RHOHA]
+<div style="background-color:#fffaf0;">
+== Publication Abstract from PubMed ==
+Members of the virulence-associated protein (Vap) family from the pathogen Rhodococcus equi regulate virulence in an unknown manner. They do not share recognizable sequence homology with any protein of known structure. VapB and VapA are normally associated with isolates from pigs and horses, respectively. To contribute to a molecular understanding of Vap function, the crystal structure of a protease-resistant VapB fragment was determined at 1.4 A resolution. The structure was solved by SAD phasing employing the anomalous signal of one endogenous S atom and two bound Co ions with low occupancy. VapB is an eight-stranded antiparallel beta-barrel with a single helix. Structural similarity to avidins suggests a potential binding function. Unlike other eight- or ten-stranded beta-barrels found in avidins, bacterial outer membrane proteins, fatty-acid-binding proteins and lysozyme inhibitors, Vaps do not have a next-neighbour arrangement but consist of two Greek-key motifs with strand order 41238567, suggesting an unusual or even unique topology.
+Structure of Rhodococcus equi virulence-associated protein B (VapB) reveals an eight-stranded antiparallel beta-barrel consisting of two Greek-key motifs.,Geerds C, Wohlmann J, Haas A, Niemann HH Acta Crystallogr F Struct Biol Commun. 2014 Jul;70(Pt 7):866-71. doi:, 10.1107/S2053230X14009911. Epub 2014 Jun 18. PMID:25005079<ref>PMID:25005079</ref>
+From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
+</div>
+<div class="pdbe-citations 4cv7" style="background-color:#fffaf0;"></div>
+== References ==
+<references/>
 __TOC__
 </StructureSection>
-[[Category: Bacillus hoagii morse 1912]]
+[[Category: Large Structures]]
-[[Category: Geerds, C.]]
+[[Category: Rhodococcus equi]]
-[[Category: Niemann, H H.]]
+[[Category: Geerds C]]
-[[Category: B-barrel]]
+[[Category: Niemann HH]]
-[[Category: Eight-stranded antiparallel beta-barrel]]
-[[Category: Greek key motif]]
-[[Category: Toxin]]
-[[Category: Virulence associated protein]]