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4bp7: Difference between revisions

New page: <div style="background-color:yellow;" border="1" cellpadding="5">''Warning: this is a large structure, and loading might take a long time or not happen at all.''</div> == Asymmetric stru...
 
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<div  style="background-color:yellow;" border="1" cellpadding="5">''Warning: this is a large structure, and loading might take a long time or not happen at all.''</div>
==Asymmetric structure of a virus-receptor complex==
== Asymmetric structure of a virus-receptor complex ==
<SX load='4bp7' size='340' side='right' viewer='molstar' caption='[[4bp7]], [[Resolution|resolution]] 39.00&Aring;' scene=''>
<StructureSection load='4bp7-pdb-bundle1.pdb.gz' size='340' side='right' caption='[[4bp7]]' scene=''>
== Structural highlights ==
== Structural highlights ==
[[4bp7]] is a 176 chain structure, available for rendering on Proteopedia in 3 parts.
<table><tr><td colspan='2'>[[4bp7]] is a 180 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_virus_MS2 Escherichia virus MS2]. This structure supersedes the now removed PDB entries [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=4bp4 4bp4], [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=4bp5 4bp5] and [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=4bp6 4bp6]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4BP7 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4BP7 FirstGlance]. <br>
You may render each one of these parts individually by selecting here: <jmol><jmolMenu>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 39&#8491;</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4bp7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4bp7 OCA], [https://pdbe.org/4bp7 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4bp7 RCSB], [https://www.ebi.ac.uk/pdbsum/4bp7 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4bp7 ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/CAPSD_BPMS2 CAPSD_BPMS2] Self-assembles to form the T=3 icosahedral virus shell that protects the viral nucleic acid. Acts as a translational repressor by binding with high specificity to a single stem-loop structure in the genomic RNA that contains the initiation codon of the gene for the viral replicase. Involved in virus assembly through the interaction between a capsid protein dimer and the multiple packaging signals present in the RNA genome.<ref>PMID:16531233</ref> <ref>PMID:18662904</ref> <ref>PMID:26608810</ref> <ref>PMID:8254664</ref> <ref>PMID:9245600</ref> <ref>PMID:9469847</ref>  
load  models {0 0 1} /cgi-bin/getlateststructure?4bp7-pdb-bundle1.pdb.gz filter "*.CA,*.P|HETATM,![HOH]";
script /wiki/extensions/Proteopedia/spt/initialview01.spt;
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load  models {0 0 1} /cgi-bin/getlateststructure?4bp7-pdb-bundle2.pdb.gz filter "*.CA,*.P|HETATM,![HOH]";
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load  models {0 0 1} /cgi-bin/getlateststructure?4bp7-pdb-bundle3.pdb.gz filter "*.CA,*.P|HETATM,![HOH]";
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== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
<div class="pdbe-citations 4bp7" style="background-color:#fffaf0;"></div>


==See Also==
*[[Virus coat proteins 3D structures|Virus coat proteins 3D structures]]
== References ==
== References ==
<references/>
<references/>
</StructureSection>
__TOC__
[[Category: Hiscox, J.A]]
</SX>
[[Category: Dent, K.C]]
[[Category: Escherichia virus MS2]]
[[Category: Barker, A.M]]
[[Category: Large Structures]]
[[Category: Ranson, N.A]]
[[Category: Barker AM]]
[[Category: Barr, J.N]]
[[Category: Barr JN]]
[[Category: Stockley, P.G]]
[[Category: Dent KC]]
[[Category: Thompson, R]]
[[Category: Hiscox JA]]
[[Category: Ranson NA]]
[[Category: Stockley PG]]
[[Category: Thompson R]]

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