4ba9: Difference between revisions

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 ==The structural basis for the coordination of Y-family Translesion DNA Polymerases by Rev1==
-<StructureSection load='4ba9' size='340' side='right' caption='[[4ba9]], [[Resolution|resolution]] 2.73&Aring;' scene=''>
+<StructureSection load='4ba9' size='340' side='right'caption='[[4ba9]], [[Resolution|resolution]] 2.73&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[4ba9]] is a 6 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4BA9 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4BA9 FirstGlance]. <br>
+<table><tr><td colspan='2'>[[4ba9]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4BA9 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4BA9 FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.73&#8491;</td></tr>
-<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1t94|1t94]], [[2w7o|2w7o]], [[2w7p|2w7p]]</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4ba9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ba9 OCA], [http://pdbe.org/4ba9 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4ba9 RCSB], [http://www.ebi.ac.uk/pdbsum/4ba9 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4ba9 ProSAT]</span></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4ba9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ba9 OCA], [https://pdbe.org/4ba9 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4ba9 RCSB], [https://www.ebi.ac.uk/pdbsum/4ba9 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4ba9 ProSAT]</span></td></tr>
 </table>
+== Function ==
+[https://www.uniprot.org/uniprot/POLK_HUMAN POLK_HUMAN] DNA polymerase specifically involved in DNA repair. Plays an important role in translesion synthesis, where the normal high-fidelity DNA polymerases cannot proceed and DNA synthesis stalls. Depending on the context, it inserts the correct base, but causes frequent base transitions, transversions and frameshifts. Lacks 3'-5' proofreading exonuclease activity. Forms a Schiff base with 5'-deoxyribose phosphate at abasic sites, but does not have lyase activity.<ref>PMID:10620008</ref> <ref>PMID:11024016</ref> <ref>PMID:12145297</ref> <ref>PMID:12444249</ref> <ref>PMID:12952891</ref> <ref>PMID:14630940</ref> <ref>PMID:15533436</ref> [https://www.uniprot.org/uniprot/REV1_HUMAN REV1_HUMAN] Deoxycytidyl transferase involved in DNA repair. Transfers a dCMP residue from dCTP to the 3'-end of a DNA primer in a template-dependent reaction. May assist in the first step in the bypass of abasic lesions by the insertion of a nucleotide opposite the lesion. Required for normal induction of mutations by physical and chemical agents.<ref>PMID:10536157</ref> <ref>PMID:10760286</ref> <ref>PMID:11278384</ref> <ref>PMID:11485998</ref> <ref>PMID:22266823</ref>
+== References ==
+<references/>
 __TOC__
 </StructureSection>
-[[Category: Frey, A]]
+[[Category: Homo sapiens]]
-[[Category: Grummitt, C G]]
+[[Category: Large Structures]]
-[[Category: Kilkenny, M L]]
+[[Category: Frey A]]
-[[Category: Oliver, A W]]
+[[Category: Grummitt CG]]
-[[Category: Pearl, L H]]
+[[Category: Kilkenny ML]]
-[[Category: Roe, S M]]
+[[Category: Oliver AW]]
-[[Category: Sale, J E]]
+[[Category: Pearl LH]]
-[[Category: Dna repair]]
+[[Category: Roe SM]]
-[[Category: Tl]]
+[[Category: Sale JE]]
-[[Category: Transferase]]