2xdq: Difference between revisions

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-==DARK OPERATIVE PROTOCHLOROPHYLLIDE OXIDOREDUCTASE (CHLN-CHLB)2 COMPLEX==
-<StructureSection load='2xdq' size='340' side='right' caption='[[2xdq]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
+==Dark Operative Protochlorophyllide Oxidoreductase (ChlN-ChlB)2 Complex==
+<StructureSection load='2xdq' size='340' side='right'caption='[[2xdq]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[2xdq]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermosynechococcus_elongatus Thermosynechococcus elongatus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2XDQ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2XDQ FirstGlance]. <br>
+<table><tr><td colspan='2'>[[2xdq]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermosynechococcus_vestitus Thermosynechococcus vestitus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2XDQ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2XDQ FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MGX:1-METHYLGUANIDINE'>MGX</scene>, <scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.4&#8491;</td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2xdq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2xdq OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2xdq RCSB], [http://www.ebi.ac.uk/pdbsum/2xdq PDBsum]</span></td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MGX:1-METHYLGUANIDINE'>MGX</scene>, <scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2xdq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2xdq OCA], [https://pdbe.org/2xdq PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2xdq RCSB], [https://www.ebi.ac.uk/pdbsum/2xdq PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2xdq ProSAT]</span></td></tr>
 </table>
+== Function ==
+[https://www.uniprot.org/uniprot/CHLN_THEVB CHLN_THEVB] Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The NB-protein (ChlN-ChlB) is the catalytic component of the complex.[HAMAP-Rule:MF_00352]
 == Evolutionary Conservation ==
 [[Image:Consurf_key_small.gif|200px|right]]
 Check<jmol>
    <jmolCheckbox>
-     <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/xd/2xdq_consurf.spt"</scriptWhenChecked>
+     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/xd/2xdq_consurf.spt"</scriptWhenChecked>
      <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
      <text>to colour the structure by Evolutionary Conservation</text>
    </jmolCheckbox>
-</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2xdq ConSurf].
 <div style="clear:both"></div>
 <div style="background-color:#fffaf0;">
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 From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 </div>
+<div class="pdbe-citations 2xdq" style="background-color:#fffaf0;"></div>
 == References ==
 <references/>
 __TOC__
 </StructureSection>
-[[Category: Thermosynechococcus elongatus]]
+[[Category: Large Structures]]
-[[Category: Broecker, M J]]
+[[Category: Thermosynechococcus vestitus]]
-[[Category: Heinz, D W]]
+[[Category: Broecker MJ]]
-[[Category: Jahn, D]]
+[[Category: Heinz DW]]
-[[Category: Moser, J]]
+[[Category: Jahn D]]
-[[Category: Schomburg, S]]
+[[Category: Moser J]]
-[[Category: Schubert, W D]]
+[[Category: Schomburg S]]
-[[Category: Dpor]]
+[[Category: Schubert W-D]]
-[[Category: Nitrogenase-like]]
-[[Category: Oxidoreductase]]
-[[Category: Photosynthesis]]