2xb4: Difference between revisions

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-==CRYSTAL STRUCTURES OF ZINC CONTAINING ADENYLATE KINASE FROM DESULFOVIBRIO GIGAS==
+==Crystal structures of zinc containing Adenylate kinase from Desulfovibrio gigas==
-<StructureSection load='2xb4' size='340' side='right' caption='[[2xb4]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
+<StructureSection load='2xb4' size='340' side='right'caption='[[2xb4]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[2xb4]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Desulfovibrio_gigas Desulfovibrio gigas]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2XB4 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2XB4 FirstGlance]. <br>
+<table><tr><td colspan='2'>[[2xb4]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Megalodesulfovibrio_gigas Megalodesulfovibrio gigas]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2XB4 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2XB4 FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SRT:S,R+MESO-TARTARIC+ACID'>SRT</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
-<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Adenylate_kinase Adenylate kinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.4.3 2.7.4.3] </span></td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SRT:S,R+MESO-TARTARIC+ACID'>SRT</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2xb4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2xb4 OCA], [http://pdbe.org/2xb4 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2xb4 RCSB], [http://www.ebi.ac.uk/pdbsum/2xb4 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2xb4 ProSAT]</span></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2xb4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2xb4 OCA], [https://pdbe.org/2xb4 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2xb4 RCSB], [https://www.ebi.ac.uk/pdbsum/2xb4 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2xb4 ProSAT]</span></td></tr>
 </table>
 == Function ==
-[[http://www.uniprot.org/uniprot/C7U112_DESGI C7U112_DESGI]] Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism (By similarity).[HAMAP-Rule:MF_00235]
+[https://www.uniprot.org/uniprot/C7U112_MEGGA C7U112_MEGGA] Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism.[HAMAP-Rule:MF_00235]
 == Evolutionary Conservation ==
 [[Image:Consurf_key_small.gif|200px|right]]
 Check<jmol>
    <jmolCheckbox>
-     <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/xb/2xb4_consurf.spt"</scriptWhenChecked>
+     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/xb/2xb4_consurf.spt"</scriptWhenChecked>
      <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
      <text>to colour the structure by Evolutionary Conservation</text>
@@ Line 32: / Line 32: @@
 ==See Also==
 *[[Adenylate kinase|Adenylate kinase]]
-*[[Journal:JBIC:1|Journal:JBIC:1]]
+*[[Adenylate kinase 3D structures|Adenylate kinase 3D structures]]
 == References ==
 <references/>
 __TOC__
 </StructureSection>
-[[Category: Adenylate kinase]]
+[[Category: Large Structures]]
-[[Category: Desulfovibrio gigas]]
+[[Category: Megalodesulfovibrio gigas]]
-[[Category: Bursakov, S A]]
+[[Category: Bursakov SA]]
-[[Category: Calvete, J J]]
+[[Category: Calvete JJ]]
-[[Category: Gavel, O Y]]
+[[Category: Gavel OY]]
-[[Category: Kladova, A V]]
+[[Category: Kladova AV]]
-[[Category: Moura, I]]
+[[Category: Moura I]]
-[[Category: Moura, J J.G]]
+[[Category: Moura JJG]]
-[[Category: Mukhopadhyay, A]]
+[[Category: Mukhopadhyay A]]
-[[Category: Romao, M J]]
+[[Category: Romao MJ]]
-[[Category: Shnyrov, V L]]
+[[Category: Shnyrov VL]]
-[[Category: Trincao, J]]
+[[Category: Trincao J]]
-[[Category: Atp-binding]]
-[[Category: Nucleotide-binding]]
-[[Category: Transferase]]