2xb3: Difference between revisions

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-[[Image:2xb3.png|left|200px]]
-<!--
+==The Structure of Cyanobacterial PsbP==
-The line below this paragraph, containing "STRUCTURE_2xb3", creates the "Structure Box" on the page.
+<StructureSection load='2xb3' size='340' side='right'caption='[[2xb3]], [[Resolution|resolution]] 2.80&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[2xb3]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermosynechococcus_vestitus_BP-1 Thermosynechococcus vestitus BP-1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2XB3 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2XB3 FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.8&#8491;</td></tr>
--->
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-{{STRUCTURE_2xb3|  PDB=2xb3  |  SCENE=  }}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2xb3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2xb3 OCA], [https://pdbe.org/2xb3 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2xb3 RCSB], [https://www.ebi.ac.uk/pdbsum/2xb3 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2xb3 ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/Q8DH84_THEVB Q8DH84_THEVB]
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/xb/2xb3_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2xb3 ConSurf].
+<div style="clear:both"></div>
+<div style="background-color:#fffaf0;">
+== Publication Abstract from PubMed ==
+We present here the crystal structure of CyanoP (Tlr2075) from Thermosynechococcus elongatus at 2.8 A. CyanoP is a substoichiometric component of the isolated cyanobacterial Photosystem II (PSII) complex, distantly related to the PsbP extrinsic subunit of the oxygen-evolving PSII complex in higher plants and green algae. Despite the relatively low degree of sequence similarity, we have found that CyanoP adopts the same beta-sandwich fold as higher-plant PsbP and contains a well-conserved metal (zinc)-binding site that is also present in plant PsbP. Our results support the idea that CyanoP represents the basal structural fold of the PsbP superfamily.
-===THE STRUCTURE OF CYANOBACTERIAL PSBP===
+Structure of CyanoP at 2.8 A: Implications for the Evolution and Function of the PsbP Subunit of Photosystem II .,Michoux F, Takasaka K, Boehm M, Nixon PJ, Murray JW Biochemistry. 2010 Aug 17. PMID:20698571<ref>PMID:20698571</ref>
+From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-<!--
+</div>
-The line below this paragraph, {{ABSTRACT_PUBMED_20698571}}, adds the Publication Abstract to the page
+<div class="pdbe-citations 2xb3" style="background-color:#fffaf0;"></div>
-(as it appears on PubMed at http://www.pubmed.gov), where 20698571 is the PubMed ID number.
+== References ==
--->
+<references/>
-{{ABSTRACT_PUBMED_20698571}}
+__TOC__
+</StructureSection>
-==About this Structure==
+[[Category: Large Structures]]
-[[2xb3]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermosynechococcus_elongatus Thermosynechococcus elongatus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2XB3 OCA].
+[[Category: Thermosynechococcus vestitus BP-1]]
+[[Category: Michoux F]]
-==Reference==
+[[Category: Murray JW]]
-<ref group="xtra">PMID:020698571</ref><references group="xtra"/>
+[[Category: Nixon P]]
-[[Category: Thermosynechococcus elongatus]]
+[[Category: Takasaka K]]
-[[Category: Michoux, F.]]
-[[Category: Murray, J W.]]
-[[Category: Nixon, P.]]
-[[Category: Takasaka, K.]]