2vxi: Difference between revisions

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-{{Seed}}
-[[Image:2vxi.png|left|200px]]
-<!--
+==The binding of heme and zinc in Escherichia coli Bacterioferritin==
-The line below this paragraph, containing "STRUCTURE_2vxi", creates the "Structure Box" on the page.
+<StructureSection load='2vxi' size='340' side='right'caption='[[2vxi]], [[Resolution|resolution]] 1.91&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[2vxi]] is a 12 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_BL21 Escherichia coli BL21]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VXI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2VXI FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.91&#8491;</td></tr>
--->
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-{{STRUCTURE_2vxi|  PDB=2vxi  |  SCENE=  }}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2vxi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vxi OCA], [https://pdbe.org/2vxi PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2vxi RCSB], [https://www.ebi.ac.uk/pdbsum/2vxi PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2vxi ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/BFR_ECOLI BFR_ECOLI] Iron-storage protein, whose ferroxidase center binds Fe(2+) ions, oxidizes them by dioxygen to Fe(3+), and participates in the subsequent Fe(3+) oxide mineral core formation within the central cavity of the protein complex. The mineralized iron core can contain as many as 2700 iron atoms/24-meric molecule.<ref>PMID:10769150</ref> <ref>PMID:14636073</ref>
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vx/2vxi_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2vxi ConSurf].
+<div style="clear:both"></div>
+<div style="background-color:#fffaf0;">
+== Publication Abstract from PubMed ==
+The crystal structure of Escherichia coli bacterioferritin has been solved to 1.9 A, and shows the symmetrical binding of a haem molecule on the local twofold axis between subunits and a pair of metal atoms bound to each subunit at the ferroxidase centre. These metals have been identified as zinc by the analysis of the structure and X-ray data and confirmed by microfocused proton-induced X-ray emission experiments. For the first time the haem has been shown to be linked to both the internal and the external environments via a cluster of waters positioned above the haem molecule.
-===THE BINDING OF HEME AND ZINC IN ESCHERICHIA COLI BACTERIOFERRITIN===
+The binding of haem and zinc in the 1.9 A X-ray structure of Escherichia coli bacterioferritin.,Willies SC, Isupov MN, Garman EF, Littlechild JA J Biol Inorg Chem. 2008 Oct 23. PMID:18946693<ref>PMID:18946693</ref>
+From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
+</div>
+<div class="pdbe-citations 2vxi" style="background-color:#fffaf0;"></div>
-<!--
+==See Also==
-The line below this paragraph, {{ABSTRACT_PUBMED_18946693}}, adds the Publication Abstract to the page
+*[[Ferritin 3D structures|Ferritin 3D structures]]
-(as it appears on PubMed at http://www.pubmed.gov), where 18946693 is the PubMed ID number.
+== References ==
--->
+<references/>
-{{ABSTRACT_PUBMED_18946693}}
+__TOC__
+</StructureSection>
-==About this Structure==
+[[Category: Escherichia coli BL21]]
-VXI is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VXI OCA].
+[[Category: Large Structures]]
+[[Category: Garman EF]]
-==Reference==
+[[Category: Isupov MN]]
-The binding of haem and zinc in the 1.9 A X-ray structure of Escherichia coli bacterioferritin., Willies SC, Isupov MN, Garman EF, Littlechild JA, J Biol Inorg Chem. 2008 Oct 23. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/18946693 18946693]
+[[Category: Littlechild JA]]
-[[Category: Escherichia coli]]
+[[Category: Willies SC]]
-[[Category: Single protein]]
-[[Category: Pdbx_ordinal=, <PDBx:audit_author.]]
-[[Category: Bacterioferritin]]
-[[Category: Heme]]
-[[Category: Iron]]
-[[Category: Iron storage]]
-[[Category: Iron storage and electron transport]]
-[[Category: Metal transport]]
-[[Category: Metal-binding]]
-[[Category: Zinc]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Dec 24 20:20:31 2008''