2v8u: Difference between revisions

From Proteopedia
Jump to navigation Jump to search
← Older edit
No edit summary
No edit summary
 
(11 intermediate revisions by the same user not shown)
Line 1: Line 1:
[[Image:2v8u.jpg|left|200px]]


{{Structure
==Atomic resolution structure of Mn catalase from Thermus Thermophilus==
|PDB= 2v8u |SIZE=350|CAPTION= <scene name='initialview01'>2v8u</scene>, resolution 1.05&Aring;
<StructureSection load='2v8u' size='340' side='right'caption='[[2v8u]], [[Resolution|resolution]] 1.05&Aring;' scene=''>
|SITE= <scene name='pdbsite=AC1:So4+Binding+Site+For+Chain+B'>AC1</scene>
== Structural highlights ==
|LIGAND= <scene name='pdbligand=LI:LITHIUM+ION'>LI</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=O:OXYGEN+ATOM'>O</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>
<table><tr><td colspan='2'>[[2v8u]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus_HB27 Thermus thermophilus HB27]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2V8U OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2V8U FirstGlance]. <br>
|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Catalase Catalase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.11.1.6 1.11.1.6] </span>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.05&#8491;</td></tr>
|GENE=
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=LI:LITHIUM+ION'>LI</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=O:OXYGEN+ATOM'>O</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
|DOMAIN=
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2v8u FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2v8u OCA], [https://pdbe.org/2v8u PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2v8u RCSB], [https://www.ebi.ac.uk/pdbsum/2v8u PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2v8u ProSAT]</span></td></tr>
|RELATEDENTRY=[[2cwl|2CWL]], [[2v8t|2V8T]]
</table>
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2v8u FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2v8u OCA], [http://www.ebi.ac.uk/pdbsum/2v8u PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2v8u RCSB]</span>
== Function ==
}}
[https://www.uniprot.org/uniprot/Q84DB4_THETH Q84DB4_THETH]
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/v8/2v8u_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2v8u ConSurf].
<div style="clear:both"></div>


'''ATOMIC RESOLUTION STRUCTURE OF MN CATALASE FROM THERMUS THERMOPHILUS'''
==See Also==
 
*[[Catalase 3D structures|Catalase 3D structures]]
 
__TOC__
==About this Structure==
</StructureSection>
2V8U is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2V8U OCA].
[[Category: Large Structures]]
[[Category: Catalase]]
[[Category: Thermus thermophilus HB27]]
[[Category: Single protein]]
[[Category: Antonyuk SV]]
[[Category: Thermus thermophilus]]
[[Category: Artymiuk PJ]]
[[Category: Antonyuk, S V.]]
[[Category: Barynin VV]]
[[Category: Artymiuk, P J.]]
[[Category: Harrison PM]]
[[Category: Barynin, V V.]]
[[Category: Lamsin VS]]
[[Category: Harrison, P M.]]
[[Category: Melik-Adamyan WR]]
[[Category: Lamsin, V S.]]
[[Category: Popov AN]]
[[Category: Melik-Adamyan, W R.]]
[[Category: Vaguine AA]]
[[Category: Popov, A N.]]
[[Category: Vaguine, A A.]]
[[Category: manganese catalase]]
[[Category: oxidoreductase]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 05:09:40 2008''

Latest revision as of 12:56, 9 May 2024

Atomic resolution structure of Mn catalase from Thermus ThermophilusAtomic resolution structure of Mn catalase from Thermus Thermophilus

Structural highlights

2v8u is a 2 chain structure with sequence from Thermus thermophilus HB27. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 1.05Å
Ligands:, , ,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

Q84DB4_THETH

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

See Also

2v8u, resolution 1.05Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA
Retrieved from "https://proteopedia.openfox.io/wiki/index.php?title=2v8u&oldid=4145090"