1sq8: Difference between revisions

← Older edit

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

@@ Line 1: / Line 1: @@
-{{Seed}}
-[[Image:1sq8.png|left|200px]]
-<!--
+==a variant 434 repressor DNA binding domain devoid of hydroxyl groups, NMR, 20 STRUCTURES==
-The line below this paragraph, containing "STRUCTURE_1sq8", creates the "Structure Box" on the page.
+<StructureSection load='1sq8' size='340' side='right'caption='[[1sq8]]' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[1sq8]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Phage_434 Phage 434]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1SQ8 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1SQ8 FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
--->
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1sq8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1sq8 OCA], [https://pdbe.org/1sq8 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1sq8 RCSB], [https://www.ebi.ac.uk/pdbsum/1sq8 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1sq8 ProSAT]</span></td></tr>
-{{STRUCTURE_1sq8|  PDB=1sq8  |  SCENE=  }}
+</table>
+== Function ==
-===a variant 434 repressor DNA binding domain devoid of hydroxyl groups, NMR, 20 STRUCTURES===
+[https://www.uniprot.org/uniprot/RPC1_BP434 RPC1_BP434] Binds to two sets of three contiguous operator sites in the phage genome.
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
-==About this Structure==
+Check<jmol>
-SQ8 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Phage_434 Phage 434]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1SQ8 OCA].
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/sq/1sq8_consurf.spt"</scriptWhenChecked>
-==Reference==
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-NMR structure of a variant 434 repressor DNA-binding domain devoid of hydroxyl groups., Iwai H, Wider G, Wuthrich K, J Biomol NMR. 2004 Jul;29(3):395-8. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/15213439 15213439]
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1sq8 ConSurf].
+<div style="clear:both"></div>
+__TOC__
+</StructureSection>
+[[Category: Large Structures]]
 [[Category: Phage 434]]
-[[Category: Single protein]]
+[[Category: Iwai H]]
-[[Category: Iwai, H.]]
+[[Category: Wider G]]
-[[Category: Wider, G.]]
+[[Category: Wuthrich K]]
-[[Category: Wuthrich, K.]]
-[[Category: Helix-turn-helix]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Jul 28 00:07:11 2008''