1rqb: Difference between revisions

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[[Image:1rqb.png|left|200px]]


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==Propionibacterium shermanii transcarboxylase 5S subunit==
The line below this paragraph, containing "STRUCTURE_1rqb", creates the "Structure Box" on the page.
<StructureSection load='1rqb' size='340' side='right'caption='[[1rqb]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
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== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[1rqb]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Propionibacterium_freudenreichii_subsp._shermanii Propionibacterium freudenreichii subsp. shermanii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1RQB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1RQB FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CO:COBALT+(II)+ION'>CO</scene>, <scene name='pdbligand=KCX:LYSINE+NZ-CARBOXYLIC+ACID'>KCX</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
{{STRUCTURE_1rqb|  PDB=1rqb  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1rqb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1rqb OCA], [https://pdbe.org/1rqb PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1rqb RCSB], [https://www.ebi.ac.uk/pdbsum/1rqb PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1rqb ProSAT]</span></td></tr>
 
</table>
===Propionibacterium shermanii transcarboxylase 5S subunit===
== Function ==
 
[https://www.uniprot.org/uniprot/5S_PROFR 5S_PROFR] The 5S subunit specifically catalyzes the transfer of the carboxyl group from biotin of the 1.3S subunit to pyruvate to form oxaloacetate and 1.3S biotin.
 
== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/rq/1rqb_consurf.spt"</scriptWhenChecked>
{{ABSTRACT_PUBMED_15329673}}
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    <text>to colour the structure by Evolutionary Conservation</text>
==About this Structure==
  </jmolCheckbox>
[[1rqb]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Propionibacterium_freudenreichii_subsp._shermanii Propionibacterium freudenreichii subsp. shermanii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1RQB OCA].  
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1rqb ConSurf].
 
<div style="clear:both"></div>
==Reference==
__TOC__
<ref group="xtra">PMID:15329673</ref><ref group="xtra">PMID:14993680</ref><references group="xtra"/>
</StructureSection>
[[Category: Methylmalonyl-CoA carboxytransferase]]
[[Category: Large Structures]]
[[Category: Propionibacterium freudenreichii subsp. shermanii]]
[[Category: Propionibacterium freudenreichii subsp. shermanii]]
[[Category: Antony, L.]]
[[Category: Antony L]]
[[Category: Carey, P R.]]
[[Category: Carey PR]]
[[Category: Hall, P R.]]
[[Category: Hall PR]]
[[Category: Pusztai-Carey, M.]]
[[Category: Pusztai-Carey M]]
[[Category: Yee, V C.]]
[[Category: Yee VC]]
[[Category: Zheng, R.]]
[[Category: Zheng R]]
[[Category: Carbamylated lysine]]
[[Category: Tim-barrel]]
[[Category: Transcarboxylase]]
[[Category: Transferase]]

Latest revision as of 11:26, 1 May 2024

Propionibacterium shermanii transcarboxylase 5S subunitPropionibacterium shermanii transcarboxylase 5S subunit

Structural highlights

1rqb is a 1 chain structure with sequence from Propionibacterium freudenreichii subsp. shermanii. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 1.9Å
Ligands:, ,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

5S_PROFR The 5S subunit specifically catalyzes the transfer of the carboxyl group from biotin of the 1.3S subunit to pyruvate to form oxaloacetate and 1.3S biotin.

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

1rqb, resolution 1.90Å

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Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA
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