2kq2: Difference between revisions

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==Solution NMR structure of the apo form of a ribonuclease H domain of protein DSY1790 from Desulfitobacterium hafniense, Northeast Structural Genomics target DhR1A==
==Solution NMR structure of the apo form of a ribonuclease H domain of protein DSY1790 from Desulfitobacterium hafniense, Northeast Structural Genomics target DhR1A==
<StructureSection load='2kq2' size='340' side='right' caption='[[2kq2]], [[NMR_Ensembles_of_Models | 20 NMR models]]' scene=''>
<StructureSection load='2kq2' size='340' side='right'caption='[[2kq2]]' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[2kq2]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Deshd Deshd]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KQ2 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2KQ2 FirstGlance]. <br>
<table><tr><td colspan='2'>[[2kq2]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Desulfitobacterium_hafniense_DCB-2 Desulfitobacterium hafniense DCB-2]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KQ2 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2KQ2 FirstGlance]. <br>
</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">Dhaf_2944 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=272564 DESHD])</td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2kq2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2kq2 OCA], [http://pdbe.org/2kq2 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2kq2 RCSB], [http://www.ebi.ac.uk/pdbsum/2kq2 PDBsum]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2kq2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2kq2 OCA], [https://pdbe.org/2kq2 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2kq2 RCSB], [https://www.ebi.ac.uk/pdbsum/2kq2 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2kq2 ProSAT]</span></td></tr>
</table>
</table>
== Function ==
[https://www.uniprot.org/uniprot/B8FYP4_DESHD B8FYP4_DESHD]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
   <jmolCheckbox>
   <jmolCheckbox>
     <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/kq/2kq2_consurf.spt"</scriptWhenChecked>
     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/kq/2kq2_consurf.spt"</scriptWhenChecked>
     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
     <text>to colour the structure by Evolutionary Conservation</text>
     <text>to colour the structure by Evolutionary Conservation</text>
   </jmolCheckbox>
   </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2kq2 ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Deshd]]
[[Category: Desulfitobacterium hafniense DCB-2]]
[[Category: Acton, T B]]
[[Category: Large Structures]]
[[Category: Belote, R L]]
[[Category: Acton TB]]
[[Category: Buchwald, W A]]
[[Category: Belote RL]]
[[Category: Ciccosanti, C]]
[[Category: Buchwald WA]]
[[Category: Eletsky, A]]
[[Category: Ciccosanti C]]
[[Category: Everett, J K]]
[[Category: Eletsky A]]
[[Category: Hua, J]]
[[Category: Everett JK]]
[[Category: Janjua, H]]
[[Category: Hua J]]
[[Category: Mills, J L]]
[[Category: Janjua H]]
[[Category: Montelione, G T]]
[[Category: Mills JL]]
[[Category: Structural genomic]]
[[Category: Montelione GT]]
[[Category: Nair, R]]
[[Category: Nair R]]
[[Category: Rost, B]]
[[Category: Rost B]]
[[Category: Szyperski, T]]
[[Category: Szyperski T]]
[[Category: Xiao, R]]
[[Category: Xiao R]]
[[Category: Apo enzyme]]
[[Category: Hydrolase]]
[[Category: Nesg]]
[[Category: Protein structure]]
[[Category: PSI, Protein structure initiative]]
[[Category: Ribonuclease h]]

Latest revision as of 09:47, 1 May 2024

Solution NMR structure of the apo form of a ribonuclease H domain of protein DSY1790 from Desulfitobacterium hafniense, Northeast Structural Genomics target DhR1ASolution NMR structure of the apo form of a ribonuclease H domain of protein DSY1790 from Desulfitobacterium hafniense, Northeast Structural Genomics target DhR1A

Structural highlights

2kq2 is a 1 chain structure with sequence from Desulfitobacterium hafniense DCB-2. Full experimental information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:Solution NMR
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

B8FYP4_DESHD

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA