2knd: Difference between revisions

← Older edit

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

@@ Line 1: / Line 1: @@
-[[Image:2knd.png|left|200px]]
-{{STRUCTURE_2knd|  PDB=2knd  |  SCENE=  }}
+==Psb27 structure from Synechocystis==
+<StructureSection load='2knd' size='340' side='right'caption='[[2knd]]' scene=''>
-===Psb27 structure from Synechocystis===
+== Structural highlights ==
+<table><tr><td colspan='2'>[[2knd]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Synechocystis_sp._PCC_6803 Synechocystis sp. PCC 6803]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KND OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2KND FirstGlance]. <br>
-{{ABSTRACT_PUBMED_19697957}}
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2knd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2knd OCA], [https://pdbe.org/2knd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2knd RCSB], [https://www.ebi.ac.uk/pdbsum/2knd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2knd ProSAT]</span></td></tr>
-==About this Structure==
+</table>
-[[2knd]] is a 1 chain structure of [[Photosystem II]] with sequence from [http://en.wikipedia.org/wiki/Synechocystis_sp. Synechocystis sp.]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KND OCA].
+== Function ==
+[https://www.uniprot.org/uniprot/PSB27_SYNY3 PSB27_SYNY3] Plays a role in the repair and/or biogenesis of the calcium-manganese-oxide cluster on the lumenal face of the thylakoid membrane. Photosystem II (PSII) complexes containing this protein are monomeric, are assembly intermediates lacking the calcium-manganese-oxide cluster and miss some of the lumenal subunits. Probably blocks binding of some of the small lumenal subunits.<ref>PMID:18089572</ref> <ref>PMID:18834146</ref> <ref>PMID:21592967</ref> <ref>PMID:22031695</ref> <ref>PMID:22086423</ref>
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/kn/2knd_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2knd ConSurf].
+<div style="clear:both"></div>
 ==See Also==
-*[[Photosystem II|Photosystem II]]
+*[[Photosystem II 3D structures|Photosystem II 3D structures]]
+== References ==
-==Reference==
+<references/>
-<ref group="xtra">PMID:019697957</ref><references group="xtra"/>
+__TOC__
-[[Category: Synechocystis sp.]]
+</StructureSection>
-[[Category: Bangert, J A.]]
+[[Category: Large Structures]]
-[[Category: Cormann, K U.]]
+[[Category: Synechocystis sp. PCC 6803]]
-[[Category: Ikeuchi, M.]]
+[[Category: Bangert J-A]]
-[[Category: Nowaczyk, M M.]]
+[[Category: Cormann KU]]
-[[Category: Roegner, M.]]
+[[Category: Ikeuchi M]]
-[[Category: Stoll, R.]]
+[[Category: Nowaczyk MM]]
-[[Category: Four-helix bundle]]
+[[Category: Roegner M]]
-[[Category: Photosynthesis]]
+[[Category: Stoll R]]
-[[Category: Photosystem ii]]
-[[Category: Protein]]
-[[Category: Right-handed]]