2kjz: Difference between revisions

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 ==Solution NMR structure of protein ATC0852 from Agrobacterium tumefaciens. Northeast Structural Genomics Consortium (NESG) target AtT2.==
-<StructureSection load='2kjz' size='340' side='right' caption='[[2kjz]], [[NMR_Ensembles_of_Models | 20 NMR models]]' scene=''>
+<StructureSection load='2kjz' size='340' side='right'caption='[[2kjz]]' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[2kjz]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Agrfc Agrfc]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KJZ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2KJZ FirstGlance]. <br>
+<table><tr><td colspan='2'>[[2kjz]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Agrobacterium_fabrum_str._C58 Agrobacterium fabrum str. C58]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KJZ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2KJZ FirstGlance]. <br>
-</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">AGR_C_1587, Atu0869 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=176299 AGRFC])</td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2kjz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2kjz OCA], [http://pdbe.org/2kjz PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2kjz RCSB], [http://www.ebi.ac.uk/pdbsum/2kjz PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2kjz ProSAT], [http://www.topsan.org/Proteins/NESGC/2kjz TOPSAN]</span></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2kjz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2kjz OCA], [https://pdbe.org/2kjz PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2kjz RCSB], [https://www.ebi.ac.uk/pdbsum/2kjz PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2kjz ProSAT], [https://www.topsan.org/Proteins/NESGC/2kjz TOPSAN]</span></td></tr>
 </table>
+== Function ==
+[https://www.uniprot.org/uniprot/A9CJT2_AGRFC A9CJT2_AGRFC]
 == Evolutionary Conservation ==
 [[Image:Consurf_key_small.gif|200px|right]]
@@ Line 17: / Line 19: @@
 </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2kjz ConSurf].
 <div style="clear:both"></div>
-<div style="background-color:#fffaf0;">
-== Publication Abstract from PubMed ==
-The quality of protein structures determined by nuclear magnetic resonance (NMR) spectroscopy is contingent on the number and quality of experimentally-derived resonance assignments, distance and angular restraints. Two key features of protein NMR data have posed challenges for the routine and automated structure determination of small to medium sized proteins; (1) spectral resolution - especially of crowded nuclear Overhauser effect spectroscopy (NOESY) spectra, and (2) the reliance on a continuous network of weak scalar couplings as part of most common assignment protocols. In order to facilitate NMR structure determination, we developed a semi-automated strategy that utilizes non-uniform sampling (NUS) and multidimensional decomposition (MDD) for optimal data collection and processing of selected, high resolution multidimensional NMR experiments, combined it with an ABACUS protocol for sequential and side chain resonance assignments, and streamlined this procedure to execute structure and refinement calculations in CYANA and CNS, respectively. Two graphical user interfaces (GUIs) were developed to facilitate efficient analysis and compilation of the data and to guide automated structure determination. This integrated method was implemented and refined on over 30 high quality structures of proteins ranging from 5.5 to 16.5 kDa in size.
-A novel strategy for NMR resonance assignment and protein structure determination.,Lemak A, Gutmanas A, Chitayat S, Karra M, Fares C, Sunnerhagen M, Arrowsmith CH J Biomol NMR. 2011 Jan;49(1):27-38. Epub 2010 Dec 14. PMID:21161328<ref>PMID:21161328</ref>
-From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-</div>
-<div class="pdbe-citations 2kjz" style="background-color:#fffaf0;"></div>
-== References ==
-<references/>
 __TOC__
 </StructureSection>
-[[Category: Agrfc]]
+[[Category: Agrobacterium fabrum str. C58]]
-[[Category: Arrowsmith, C]]
+[[Category: Large Structures]]
-[[Category: Fares, C]]
+[[Category: Arrowsmith C]]
-[[Category: Garcia, M]]
+[[Category: Fares C]]
-[[Category: Gutmanas, A]]
+[[Category: Garcia M]]
-[[Category: Lemak, A]]
+[[Category: Gutmanas A]]
-[[Category: Montelione, G]]
+[[Category: Lemak A]]
-[[Category: Structural genomic]]
+[[Category: Montelione G]]
-[[Category: Yee, A]]
+[[Category: Yee A]]
-[[Category: Dimer]]
-[[Category: Nesg]]
-[[Category: Protein of unknown function]]
-[[Category: PSI, Protein structure initiative]]
-[[Category: Unknown function]]