2kjl: Difference between revisions

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[[Image:2kjl.png|left|200px]]


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==NMR structures of a designed Cyanovirin-N homolog lectin; LKAMG==
The line below this paragraph, containing "STRUCTURE_2kjl", creates the "Structure Box" on the page.
<StructureSection load='2kjl' size='340' side='right'caption='[[2kjl]]' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[2kjl]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Neurospora_crassa Neurospora crassa] and [https://en.wikipedia.org/wiki/Tuber_borchii Tuber borchii]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KJL OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2KJL FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2kjl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2kjl OCA], [https://pdbe.org/2kjl PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2kjl RCSB], [https://www.ebi.ac.uk/pdbsum/2kjl PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2kjl ProSAT]</span></td></tr>
{{STRUCTURE_2kjl|  PDB=2kjl  |  SCENE=  }}
</table>
 
== Function ==
===NMR structures of a designed Cyanovirin-N homolog lectin; LKAMG===
[https://www.uniprot.org/uniprot/CVNH_NEUCR CVNH_NEUCR] Mannose-binding lectin.<ref>PMID:18400178</ref> [https://www.uniprot.org/uniprot/CVNH_TUBBO CVNH_TUBBO] Mannose-binding lectin.<ref>PMID:18400178</ref>
 
== Evolutionary Conservation ==
 
[[Image:Consurf_key_small.gif|200px|right]]
==About this Structure==
Check<jmol>
2KJL is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Tuber_borchii,neurospora_crassa,tuber_borchii Tuber borchii,neurospora crassa,tuber borchii]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KJL OCA].  
  <jmolCheckbox>
[[Category: Tuber borchii,neurospora crassa,tuber borchii]]
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/kj/2kjl_consurf.spt"</scriptWhenChecked>
[[Category: Gronenborn, A M.]]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
[[Category: Koharudin, L M.I.]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: Cvnh]]
  </jmolCheckbox>
[[Category: Cyanovirin-n]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2kjl ConSurf].
[[Category: Lectin]]
<div style="clear:both"></div>
[[Category: Sugar binding protein]]
== References ==
 
<references/>
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jul  1 20:07:15 2009''
__TOC__
</StructureSection>
[[Category: Large Structures]]
[[Category: Neurospora crassa]]
[[Category: Tuber borchii]]
[[Category: Gronenborn AM]]
[[Category: Koharudin LMI]]

Latest revision as of 09:46, 1 May 2024

NMR structures of a designed Cyanovirin-N homolog lectin; LKAMGNMR structures of a designed Cyanovirin-N homolog lectin; LKAMG

Structural highlights

2kjl is a 1 chain structure with sequence from Neurospora crassa and Tuber borchii. Full experimental information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:Solution NMR
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

CVNH_NEUCR Mannose-binding lectin.[1] CVNH_TUBBO Mannose-binding lectin.[2]

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

References

  1. ↑ Koharudin LM, Viscomi AR, Jee JG, Ottonello S, Gronenborn AM. The evolutionarily conserved family of cyanovirin-N homologs: structures and carbohydrate specificity. Structure. 2008 Apr;16(4):570-84. PMID:18400178 doi:10.1016/j.str.2008.01.015
  2. ↑ Koharudin LM, Viscomi AR, Jee JG, Ottonello S, Gronenborn AM. The evolutionarily conserved family of cyanovirin-N homologs: structures and carbohydrate specificity. Structure. 2008 Apr;16(4):570-84. PMID:18400178 doi:10.1016/j.str.2008.01.015
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