2gmg: Difference between revisions

From Proteopedia
Jump to navigation Jump to search
← Older edit
No edit summary
No edit summary
 
(10 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{Seed}}
[[Image:2gmg.png|left|200px]]


<!--
==Solution NMR Structure of protein PF0610 from Pyrococcus furiosus, Northeast Structural Genomics Consortium Target PfG3==
The line below this paragraph, containing "STRUCTURE_2gmg", creates the "Structure Box" on the page.
<StructureSection load='2gmg' size='340' side='right'caption='[[2gmg]]' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[2gmg]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_furiosus_DSM_3638 Pyrococcus furiosus DSM 3638]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GMG OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2GMG FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
-->
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2gmg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2gmg OCA], [https://pdbe.org/2gmg PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2gmg RCSB], [https://www.ebi.ac.uk/pdbsum/2gmg PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2gmg ProSAT], [https://www.topsan.org/Proteins/NESGC/2gmg TOPSAN]</span></td></tr>
{{STRUCTURE_2gmg|  PDB=2gmg  |  SCENE=  }}
</table>
 
== Function ==
===Solution NMR Structure of protein PF0610 from Pyrococcus furiosus, Northeast Structural Genomics Consortium Target PfG3===
[https://www.uniprot.org/uniprot/Q8U362_PYRFU Q8U362_PYRFU]  
 
== Evolutionary Conservation ==
 
[[Image:Consurf_key_small.gif|200px|right]]
<!--
Check<jmol>
The line below this paragraph, {{ABSTRACT_PUBMED_17223696}}, adds the Publication Abstract to the page
  <jmolCheckbox>
(as it appears on PubMed at http://www.pubmed.gov), where 17223696 is the PubMed ID number.
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gm/2gmg_consurf.spt"</scriptWhenChecked>
-->
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
{{ABSTRACT_PUBMED_17223696}}
    <text>to colour the structure by Evolutionary Conservation</text>
 
  </jmolCheckbox>
==About this Structure==
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2gmg ConSurf].
2GMG is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Pyrococcus_furiosus_dsm_3638 Pyrococcus furiosus dsm 3638]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GMG OCA].  
<div style="clear:both"></div>
 
__TOC__
==Reference==
</StructureSection>
PF0610, a novel winged helix-turn-helix variant possessing a rubredoxin-like Zn ribbon motif from the hyperthermophilic archaeon, Pyrococcus furiosus., Wang X, Lee HS, Sugar FJ, Jenney FE Jr, Adams MW, Prestegard JH, Biochemistry. 2007 Jan 23;46(3):752-61. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/17223696 17223696]
[[Category: Large Structures]]
[[Category: Pyrococcus furiosus dsm 3638]]
[[Category: Pyrococcus furiosus DSM 3638]]
[[Category: Single protein]]
[[Category: Adams MW]]
[[Category: Adams, M W.]]
[[Category: Lee HS]]
[[Category: Lee, H S.]]
[[Category: Montelione GT]]
[[Category: Montelione, G T.]]
[[Category: Prestegard JH]]
[[Category: NESG, Northeast Structural Genomics Consortium.]]
[[Category: Wang X]]
[[Category: Prestegard, J H.]]
[[Category: Wang, X.]]
[[Category: Dna binding protein]]
[[Category: Nesg]]
[[Category: Northeast structural genomics consortium]]
[[Category: Protein structure initiative]]
[[Category: Psi]]
[[Category: Structural genomic]]
[[Category: Winged-helix like protein with metal binding site]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Jul 27 19:41:23 2008''

Latest revision as of 09:40, 1 May 2024

Solution NMR Structure of protein PF0610 from Pyrococcus furiosus, Northeast Structural Genomics Consortium Target PfG3Solution NMR Structure of protein PF0610 from Pyrococcus furiosus, Northeast Structural Genomics Consortium Target PfG3

Structural highlights

2gmg is a 1 chain structure with sequence from Pyrococcus furiosus DSM 3638. Full experimental information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:Solution NMR
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT, TOPSAN

Function

Q8U362_PYRFU

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA
Retrieved from "https://proteopedia.openfox.io/wiki/index.php?title=2gmg&oldid=4135500"