2f8u: Difference between revisions

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==G-quadruplex structure formed in human Bcl-2 promoter, hybrid form==
==G-quadruplex structure formed in human Bcl-2 promoter, hybrid form==
<StructureSection load='2f8u' size='340' side='right' caption='[[2f8u]], [[NMR_Ensembles_of_Models | 10 NMR models]]' scene=''>
<StructureSection load='2f8u' size='340' side='right'caption='[[2f8u]]' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[2f8u]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2F8U OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2F8U FirstGlance]. <br>
<table><tr><td colspan='2'>[[2f8u]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2F8U OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2F8U FirstGlance]. <br>
</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1xav|1xav]], [[2lby|2lby]], [[2m27|2m27]]</td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2f8u FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2f8u OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2f8u RCSB], [http://www.ebi.ac.uk/pdbsum/2f8u PDBsum]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2f8u FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2f8u OCA], [https://pdbe.org/2f8u PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2f8u RCSB], [https://www.ebi.ac.uk/pdbsum/2f8u PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2f8u ProSAT]</span></td></tr>
</table>
</table>
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
BCL2 protein functions as an inhibitor of cell apoptosis and has been found to be aberrantly expressed in a wide range of human diseases. A highly GC-rich region upstream of the P1 promoter plays an important role in the transcriptional regulation of BCL2. Here we report the NMR solution structure of the major intramolecular G-quadruplex formed on the G-rich strand of this region in K+ solution. This well-defined mixed parallel/antiparallel-stranded G-quadruplex structure contains three G-tetrads of mixed G-arrangements, which are connected with two lateral loops and one side loop, and four grooves of different widths. The three loops interact with the core G-tetrads in a specific way that defines and stabilizes the overall G-quadruplex structure. The loop conformations are in accord with the experimental mutation and footprinting data. The first 3-nt loop adopts a lateral loop conformation and appears to determine the overall folding of the BCL2 G-quadruplex. The third 1-nt double-chain-reversal loop defines another example of a stable parallel-stranded structural motif using the G3NG3 sequence. Significantly, the distinct major BCL2 promoter G-quadruplex structure suggests that it can be specifically involved in gene modulation and can be an attractive target for pathway-specific drug design.
NMR solution structure of the major G-quadruplex structure formed in the human BCL2 promoter region.,Dai J, Chen D, Jones RA, Hurley LH, Yang D Nucleic Acids Res. 2006;34(18):5133-44. Epub 2006 Sep 22. PMID:16998187<ref>PMID:16998187</ref>
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
== References ==
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Carver, M]]
[[Category: Large Structures]]
[[Category: Chen, D]]
[[Category: Carver M]]
[[Category: Dai, J]]
[[Category: Chen D]]
[[Category: Yang, D]]
[[Category: Dai J]]
[[Category: Bcl-2 promoter]]
[[Category: Yang D]]
[[Category: Dna]]
[[Category: G-quadruplex]]

Latest revision as of 09:40, 1 May 2024

G-quadruplex structure formed in human Bcl-2 promoter, hybrid formG-quadruplex structure formed in human Bcl-2 promoter, hybrid form

Structural highlights

2f8u is a 1 chain structure. Full experimental information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:Solution NMR
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT
Drag the structure with the mouse to rotate

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