2exd: Difference between revisions

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OCA

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-{{Seed}}
-[[Image:2exd.png|left|200px]]
-<!--
+==The solution structure of the C-terminal domain of a nfeD homolog from Pyrococcus horikoshii==
-The line below this paragraph, containing "STRUCTURE_2exd", creates the "Structure Box" on the page.
+<StructureSection load='2exd' size='340' side='right'caption='[[2exd]]' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[2exd]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_horikoshii_OT3 Pyrococcus horikoshii OT3]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2EXD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2EXD FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
--->
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2exd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2exd OCA], [https://pdbe.org/2exd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2exd RCSB], [https://www.ebi.ac.uk/pdbsum/2exd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2exd ProSAT]</span></td></tr>
-{{STRUCTURE_2exd|  PDB=2exd  |  SCENE=  }}
+</table>
+== Function ==
-===The solution structure of the C-terminal domain of a nfeD homolog from Pyrococcus horikoshii===
+[https://www.uniprot.org/uniprot/O58204_PYRHO O58204_PYRHO]
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
-<!--
+Check<jmol>
-The line below this paragraph, {{ABSTRACT_PUBMED_18687870}}, adds the Publication Abstract to the page
+  <jmolCheckbox>
-(as it appears on PubMed at http://www.pubmed.gov), where 18687870 is the PubMed ID number.
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ex/2exd_consurf.spt"</scriptWhenChecked>
--->
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-{{ABSTRACT_PUBMED_18687870}}
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
-==About this Structure==
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2exd ConSurf].
-EXD is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Pyrococcus_horikoshii_ot3 Pyrococcus horikoshii ot3]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2EXD OCA].
+<div style="clear:both"></div>
+__TOC__
-==Reference==
+</StructureSection>
-<ref group="xtra">PMID:18687870</ref><references group="xtra"/>
+[[Category: Large Structures]]
-[[Category: Pyrococcus horikoshii ot3]]
+[[Category: Pyrococcus horikoshii OT3]]
-[[Category: Hiroaki, H.]]
+[[Category: Hiroaki H]]
-[[Category: Kuwahara, Y.]]
+[[Category: Kuwahara Y]]
-[[Category: Morii, T.]]
+[[Category: Morii T]]
-[[Category: Ohno, A.]]
+[[Category: Ohno A]]
-[[Category: Shirakawa, M.]]
+[[Category: Shirakawa M]]
-[[Category: Tochio, H.]]
+[[Category: Tochio H]]
-[[Category: Membrane protein]]
-[[Category: Nfed]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed May 20 15:51:05 2009''