2den: Difference between revisions

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-{{Seed}}
-[[Image:2den.png|left|200px]]
-<!--
+==Solution Structure of the Ubiquitin-Associated Domain of Human BMSC-UbP and its Complex with Ubiquitin==
-The line below this paragraph, containing "STRUCTURE_2den", creates the "Structure Box" on the page.
+<StructureSection load='2den' size='340' side='right'caption='[[2den]]' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[2den]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] and [https://en.wikipedia.org/wiki/Streptococcus_sp._'group_G' Streptococcus sp. 'group G']. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DEN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2DEN FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
--->
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2den FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2den OCA], [https://pdbe.org/2den PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2den RCSB], [https://www.ebi.ac.uk/pdbsum/2den PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2den ProSAT]</span></td></tr>
-{{STRUCTURE_2den|  PDB=2den  |  SCENE=  }}
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/UBL7_HUMAN UBL7_HUMAN]
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/de/2den_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2den ConSurf].
+<div style="clear:both"></div>
-===Solution Structure of the Ubiquitin-Associated Domain of Human BMSC-UbP and its Complex with Ubiquitin===
+==See Also==
+*[[3D structures of ubiquitin|3D structures of ubiquitin]]
+__TOC__
-<!--
+</StructureSection>
-The line below this paragraph, {{ABSTRACT_PUBMED_16731964}}, adds the Publication Abstract to the page
-(as it appears on PubMed at http://www.pubmed.gov), where 16731964 is the PubMed ID number.
--->
-{{ABSTRACT_PUBMED_16731964}}
-==About this Structure==
-DEN is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] and [http://en.wikipedia.org/wiki/Streptococcus_sp._and_homo_sapiens Streptococcus sp. and homo sapiens]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DEN OCA].
-==Reference==
-<ref group="xtra">PMID:16731964</ref><references group="xtra"/>
 [[Category: Homo sapiens]]
-[[Category: Streptococcus sp. and homo sapiens]]
+[[Category: Large Structures]]
-[[Category: Chang, Y G.]]
+[[Category: Streptococcus sp. 'group G']]
-[[Category: Hu, H Y.]]
+[[Category: Chang YG]]
-[[Category: Lin, D H.]]
+[[Category: Hu HY]]
-[[Category: A:alpha-alpha-alpha]]
+[[Category: Lin DH]]
-[[Category: B:beta-beta-helix-helix-beta-beta-helix-beta]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Feb 16 17:11:39 2009''