1vyd: Difference between revisions

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-{{Seed}}
-[[Image:1vyd.png|left|200px]]
-<!--
+==Crystal structure of cytochrome C2 mutant G95E==
-The line below this paragraph, containing "STRUCTURE_1vyd", creates the "Structure Box" on the page.
+<StructureSection load='1vyd' size='340' side='right'caption='[[1vyd]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[1vyd]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Rhodobacter_capsulatus Rhodobacter capsulatus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VYD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1VYD FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.3&#8491;</td></tr>
--->
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene></td></tr>
-{{STRUCTURE_1vyd|  PDB=1vyd  |  SCENE=  }}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1vyd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1vyd OCA], [https://pdbe.org/1vyd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1vyd RCSB], [https://www.ebi.ac.uk/pdbsum/1vyd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1vyd ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/CYC2_RHOCB CYC2_RHOCB] Cytochrome c2 is found mainly in purple, non-sulfur, photosynthetic bacteria where it functions as the electron donor to the oxidized bacteriochlorophyll in the photophosphorylation pathway. However, it may also have a role in the respiratory chain and is found in some non-photosynthetic bacteria.
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vy/1vyd_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1vyd ConSurf].
+<div style="clear:both"></div>
-===CRYSTAL STRUCTURE OF CYTOCHROME C2 MUTANT G95E===
+==See Also==
+*[[Cytochrome C 3D structures|Cytochrome C 3D structures]]
+__TOC__
-<!--
+</StructureSection>
-The line below this paragraph, {{ABSTRACT_PUBMED_15196014}}, adds the Publication Abstract to the page
+[[Category: Large Structures]]
-(as it appears on PubMed at http://www.pubmed.gov), where 15196014 is the PubMed ID number.
--->
-{{ABSTRACT_PUBMED_15196014}}
-==About this Structure==
-VYD is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Rhodobacter_capsulatus Rhodobacter capsulatus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VYD OCA].
-==Reference==
-<ref group="xtra">PMID:15196014</ref><references group="xtra"/>
 [[Category: Rhodobacter capsulatus]]
-[[Category: Beeumen, J J.Van.]]
+[[Category: Cusanovich MA]]
-[[Category: Cusanovich, M A.]]
+[[Category: Dumortier C]]
-[[Category: Dumortier, C.]]
+[[Category: Fitch J]]
-[[Category: Fitch, J.]]
+[[Category: Meyer TE]]
-[[Category: Meyer, T E.]]
+[[Category: Van Beeumen JJ]]
-[[Category: Petegem, F Van.]]
+[[Category: Van Petegem F]]
-[[Category: Vermeulen, W.]]
+[[Category: Vermeulen W]]
-[[Category: Cytochrome c2]]
-[[Category: Electron transport]]
-[[Category: Mutant]]
-[[Category: Redox]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Feb 18 03:48:32 2009''