1ik1: Difference between revisions

From Proteopedia
Jump to navigation Jump to search
← Older edit
No edit summary
No edit summary
 
(5 intermediate revisions by the same user not shown)
Line 1: Line 1:
==Solution Structure of an RNA Hairpin from HRV-14==
==Solution Structure of an RNA Hairpin from HRV-14==
<StructureSection load='1ik1' size='340' side='right' caption='[[1ik1]], [[NMR_Ensembles_of_Models | 1 NMR models]]' scene=''>
<StructureSection load='1ik1' size='340' side='right'caption='[[1ik1]]' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[1ik1]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1IK1 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1IK1 FirstGlance]. <br>
<table><tr><td colspan='2'>[[1ik1]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1IK1 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1IK1 FirstGlance]. <br>
</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ik1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ik1 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1ik1 RCSB], [http://www.ebi.ac.uk/pdbsum/1ik1 PDBsum]</span></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ik1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ik1 OCA], [https://pdbe.org/1ik1 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ik1 RCSB], [https://www.ebi.ac.uk/pdbsum/1ik1 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ik1 ProSAT]</span></td></tr>
</table>
</table>
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
The 5' noncoding region of the picornaviral genome begins with a cloverleaf which is required for viral replication, due at least in part to an interaction with the viral RNA polymerase as part of a fusion with the predominant viral protease. The necessary region of the cloverleaf has previously been narrowed to a highly conserved stem-loop. The solution structure of a 14-nucleotide RNA hairpin, which is part of the conserved stem-loop from human rhinovirus isotype 14, is presented here. The secondary structure of the hairpin is identical to predictions: a five base pair stem is bounded by a triloop with sequence UAU. However, the fold of the triloop is novel, with stacking of the second loop base onto the closing base pair of the stem, and deviations from A form geometry are introduced into the stem regions bordering the triloop, particularly on the 3' side. These deviations and the associated triloop structure could help to explain the distinct sequence conservation and mutational analysis data observed for the stem region of the hairpin, as compared to a second sequentially similar stem in the intact stem-loop.
Structure of an RNA hairpin from HRV-14.,Huang H, Alexandrov A, Chen X, Barnes TW 3rd, Zhang H, Dutta K, Pascal SM Biochemistry. 2001 Jul 10;40(27):8055-64. PMID:11434774<ref>PMID:11434774</ref>
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
== References ==
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Alexandrov, A]]
[[Category: Large Structures]]
[[Category: Chen, X]]
[[Category: Alexandrov A]]
[[Category: Dutta, K]]
[[Category: Barnes III TW]]
[[Category: Huang, H]]
[[Category: Chen X]]
[[Category: III, T W.Barnes]]
[[Category: Dutta K]]
[[Category: Pascal, S M]]
[[Category: Huang H]]
[[Category: Zhang, H]]
[[Category: Pascal SM]]
[[Category: A form helix]]
[[Category: Zhang H]]
[[Category: Rna]]
[[Category: Triloop]]

Latest revision as of 09:30, 1 May 2024

Solution Structure of an RNA Hairpin from HRV-14Solution Structure of an RNA Hairpin from HRV-14

Structural highlights

1ik1 is a 1 chain structure. Full experimental information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:Solution NMR
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT
Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA
Retrieved from "https://proteopedia.openfox.io/wiki/index.php?title=1ik1&oldid=4135081"