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| [[Image:1ik1.gif|left|200px]]
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| {{Structure
| | ==Solution Structure of an RNA Hairpin from HRV-14== |
| |PDB= 1ik1 |SIZE=350|CAPTION= <scene name='initialview01'>1ik1</scene>
| | <StructureSection load='1ik1' size='340' side='right'caption='[[1ik1]]' scene=''> |
| |SITE=
| | == Structural highlights == |
| |LIGAND=
| | <table><tr><td colspan='2'>[[1ik1]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1IK1 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1IK1 FirstGlance]. <br> |
| |ACTIVITY=
| | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr> |
| |GENE=
| | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ik1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ik1 OCA], [https://pdbe.org/1ik1 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ik1 RCSB], [https://www.ebi.ac.uk/pdbsum/1ik1 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ik1 ProSAT]</span></td></tr> |
| }}
| | </table> |
| | | __TOC__ |
| '''Solution Structure of an RNA Hairpin from HRV-14''' | | </StructureSection> |
| | | [[Category: Large Structures]] |
| | | [[Category: Alexandrov A]] |
| ==Overview== | | [[Category: Barnes III TW]] |
| The 5' noncoding region of the picornaviral genome begins with a cloverleaf which is required for viral replication, due at least in part to an interaction with the viral RNA polymerase as part of a fusion with the predominant viral protease. The necessary region of the cloverleaf has previously been narrowed to a highly conserved stem-loop. The solution structure of a 14-nucleotide RNA hairpin, which is part of the conserved stem-loop from human rhinovirus isotype 14, is presented here. The secondary structure of the hairpin is identical to predictions: a five base pair stem is bounded by a triloop with sequence UAU. However, the fold of the triloop is novel, with stacking of the second loop base onto the closing base pair of the stem, and deviations from A form geometry are introduced into the stem regions bordering the triloop, particularly on the 3' side. These deviations and the associated triloop structure could help to explain the distinct sequence conservation and mutational analysis data observed for the stem region of the hairpin, as compared to a second sequentially similar stem in the intact stem-loop.
| | [[Category: Chen X]] |
| | | [[Category: Dutta K]] |
| ==About this Structure== | | [[Category: Huang H]] |
| 1IK1 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/ ]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1IK1 OCA].
| | [[Category: Pascal SM]] |
| | | [[Category: Zhang H]] |
| ==Reference==
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| Structure of an RNA hairpin from HRV-14., Huang H, Alexandrov A, Chen X, Barnes TW 3rd, Zhang H, Dutta K, Pascal SM, Biochemistry. 2001 Jul 10;40(27):8055-64. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/11434774 11434774]
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| [[Category: Single protein]] | |
| [[Category: Alexandrov, A.]] | |
| [[Category: Chen, X.]] | |
| [[Category: Dutta, K.]] | |
| [[Category: Huang, H.]] | |
| [[Category: III, T W.Barnes.]] | |
| [[Category: Pascal, S M.]] | |
| [[Category: Zhang, H.]] | |
| [[Category: a form helix]]
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| [[Category: triloop]]
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| ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 11:51:23 2008''
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