8has: Difference between revisions

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'''Unreleased structure'''


The entry 8has is ON HOLD  until Paper Publication
==NARROW LEAF 1-close from Japonica==
 
<StructureSection load='8has' size='340' side='right'caption='[[8has]], [[Resolution|resolution]] 2.89&Aring;' scene=''>
Authors: Zhang, S.J., He, Y.J., Wang, N., Zhang, W.J., Liu, C.M.
== Structural highlights ==
 
<table><tr><td colspan='2'>[[8has]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Oryza_sativa_Japonica_Group Oryza sativa Japonica Group]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=8HAS OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=8HAS FirstGlance]. <br>
Description: NARROW LEAF 1-close from Japonica
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 2.89&#8491;</td></tr>
[[Category: Unreleased Structures]]
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ATP:ADENOSINE-5-TRIPHOSPHATE'>ATP</scene></td></tr>
[[Category: Wang, N]]
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=8has FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=8has OCA], [https://pdbe.org/8has PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=8has RCSB], [https://www.ebi.ac.uk/pdbsum/8has PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=8has ProSAT]</span></td></tr>
[[Category: Zhang, S.J]]
</table>
[[Category: He, Y.J]]
== Function ==
[[Category: Zhang, W.J]]
[https://www.uniprot.org/uniprot/NAL1_ORYSJ NAL1_ORYSJ] Involved in the regulation of lateral leaf growth (PubMed:18562767, PubMed:22179305, PubMed:23985993). May be involved in the regulation of basipetal polar auxin transport (PAT) and vascular patterning in leaves (PubMed:18562767). Controls photosynthesis rate by regulating carboxylation efficiency and consequently photosynthesis rate (PubMed:23985993). Controls panicle and spikelet numbers, and grain yield (PubMed:23985993, PubMed:24297875, PubMed:24795339).<ref>PMID:18562767</ref> <ref>PMID:22179305</ref> <ref>PMID:23985993</ref> <ref>PMID:24297875</ref> <ref>PMID:24795339</ref>
[[Category: Liu, C.M]]
== References ==
<references/>
__TOC__
</StructureSection>
[[Category: Large Structures]]
[[Category: Oryza sativa Japonica Group]]
[[Category: He YJ]]
[[Category: Liu CM]]
[[Category: Wang N]]
[[Category: Zhang SJ]]
[[Category: Zhang WJ]]

Latest revision as of 09:18, 1 May 2024

NARROW LEAF 1-close from JaponicaNARROW LEAF 1-close from Japonica

Structural highlights

8has is a 6 chain structure with sequence from Oryza sativa Japonica Group. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:Electron Microscopy, Resolution 2.89Å
Ligands:
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

NAL1_ORYSJ Involved in the regulation of lateral leaf growth (PubMed:18562767, PubMed:22179305, PubMed:23985993). May be involved in the regulation of basipetal polar auxin transport (PAT) and vascular patterning in leaves (PubMed:18562767). Controls photosynthesis rate by regulating carboxylation efficiency and consequently photosynthesis rate (PubMed:23985993). Controls panicle and spikelet numbers, and grain yield (PubMed:23985993, PubMed:24297875, PubMed:24795339).[1] [2] [3] [4] [5]

References

  1. ↑ Qi J, Qian Q, Bu Q, Li S, Chen Q, Sun J, Liang W, Zhou Y, Chu C, Li X, Ren F, Palme K, Zhao B, Chen J, Chen M, Li C. Mutation of the rice Narrow leaf1 gene, which encodes a novel protein, affects vein patterning and polar auxin transport. Plant Physiol. 2008 Aug;147(4):1947-59. PMID:18562767 doi:10.1104/pp.108.118778
  2. ↑ Chen M, Luo J, Shao G, Wei X, Tang S, Sheng Z, Song J, Hu P. Fine mapping of a major QTL for flag leaf width in rice, qFLW4, which might be caused by alternative splicing of NAL1. Plant Cell Rep. 2012 May;31(5):863-72. PMID:22179305 doi:10.1007/s00299-011-1207-7
  3. ↑ Takai T, Adachi S, Taguchi-Shiobara F, Sanoh-Arai Y, Iwasawa N, Yoshinaga S, Hirose S, Taniguchi Y, Yamanouchi U, Wu J, Matsumoto T, Sugimoto K, Kondo K, Ikka T, Ando T, Kono I, Ito S, Shomura A, Ookawa T, Hirasawa T, Yano M, Kondo M, Yamamoto T. A natural variant of NAL1, selected in high-yield rice breeding programs, pleiotropically increases photosynthesis rate. Sci Rep. 2013;3:2149. PMID:23985993 doi:10.1038/srep02149
  4. ↑ Fujita D, Trijatmiko KR, Tagle AG, Sapasap MV, Koide Y, Sasaki K, Tsakirpaloglou N, Gannaban RB, Nishimura T, Yanagihara S, Fukuta Y, Koshiba T, Slamet-Loedin IH, Ishimaru T, Kobayashi N. NAL1 allele from a rice landrace greatly increases yield in modern indica cultivars. Proc Natl Acad Sci U S A. 2013 Dec 17;110(51):20431-6. PMID:24297875 doi:10.1073/pnas.1310790110
  5. ↑ Zhang GH, Li SY, Wang L, Ye WJ, Zeng DL, Rao YC, Peng YL, Hu J, Yang YL, Xu J, Ren DY, Gao ZY, Zhu L, Dong GJ, Hu XM, Yan MX, Guo LB, Li CY, Qian Q. LSCHL4 from Japonica Cultivar, which is allelic to NAL1, increases yield of indica super rice 93-11. Mol Plant. 2014 Aug;7(8):1350-1364. PMID:24795339 doi:10.1093/mp/ssu055

8has, resolution 2.89Å

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