1r2n: Difference between revisions

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[[Image:1r2n.png|left|200px]]


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==NMR structure of the all-trans retinal in dark-adapted Bacteriorhodopsin==
The line below this paragraph, containing "STRUCTURE_1r2n", creates the "Structure Box" on the page.
<StructureSection load='1r2n' size='340' side='right'caption='[[1r2n]]' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[1r2n]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Halobacterium_salinarum Halobacterium salinarum]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1R2N OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1R2N FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=RET:RETINAL'>RET</scene></td></tr>
{{STRUCTURE_1r2n|  PDB=1r2n |  SCENE= }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1r2n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1r2n OCA], [https://pdbe.org/1r2n PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1r2n RCSB], [https://www.ebi.ac.uk/pdbsum/1r2n PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1r2n ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/BACR_HALSA BACR_HALSA] Light-driven proton pump.
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/r2/1r2n_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1r2n ConSurf].
<div style="clear:both"></div>


===NMR structure of the all-trans retinal in dark-adapted Bacteriorhodopsin===
==See Also==
 
*[[Bacteriorhodopsin 3D structures|Bacteriorhodopsin 3D structures]]
 
__TOC__
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</StructureSection>
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{{ABSTRACT_PUBMED_12119389}}
 
==About this Structure==
1R2N is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Halobacterium_salinarum Halobacterium salinarum]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1R2N OCA].
 
==Reference==
The structures of the active center in dark-adapted bacteriorhodopsin by solution-state NMR spectroscopy., Patzelt H, Simon B, terLaak A, Kessler B, Kuhne R, Schmieder P, Oesterhelt D, Oschkinat H, Proc Natl Acad Sci U S A. 2002 Jul 23;99(15):9765-70. Epub 2002 Jul 15. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/12119389 12119389]
[[Category: Halobacterium salinarum]]
[[Category: Halobacterium salinarum]]
[[Category: Single protein]]
[[Category: Large Structures]]
[[Category: Kessler, B.]]
[[Category: Kessler B]]
[[Category: Kuhne, R.]]
[[Category: Kuhne R]]
[[Category: Oesterhaelt, D.]]
[[Category: Oesterhaelt D]]
[[Category: Oschkinat, H.]]
[[Category: Oschkinat H]]
[[Category: Patzelt, H.]]
[[Category: Patzelt H]]
[[Category: Schmieder, P.]]
[[Category: Schmieder P]]
[[Category: Simon, B.]]
[[Category: Simon B]]
[[Category: TerLaak, A.]]
[[Category: TerLaak A]]
[[Category: Haloarchaea]]
[[Category: Membrane protein]]
[[Category: Nmr]]
[[Category: Photoreceptor]]
[[Category: Proton pump]]
[[Category: Proton transport]]
[[Category: Retinal protein]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Jul 29 09:59:24 2008''

Latest revision as of 09:08, 17 April 2024

NMR structure of the all-trans retinal in dark-adapted BacteriorhodopsinNMR structure of the all-trans retinal in dark-adapted Bacteriorhodopsin

Structural highlights

1r2n is a 1 chain structure with sequence from Halobacterium salinarum. Full experimental information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:Solution NMR
Ligands:
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

BACR_HALSA Light-driven proton pump.

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

See Also

Drag the structure with the mouse to rotate

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