1q8s: Difference between revisions

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{{Seed}}
[[Image:1q8s.png|left|200px]]


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==Pterocarpus angolensis lectin (PAL) in complex with the dimannoside Man(alpha1-6)Man==
The line below this paragraph, containing "STRUCTURE_1q8s", creates the "Structure Box" on the page.
<StructureSection load='1q8s' size='340' side='right'caption='[[1q8s]], [[Resolution|resolution]] 2.05&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)  
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[1q8s]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Pterocarpus_angolensis Pterocarpus angolensis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Q8S OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1Q8S FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.05&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene>, <scene name='pdbligand=MMA:O1-METHYL-MANNOSE'>MMA</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=PCA:PYROGLUTAMIC+ACID'>PCA</scene></td></tr>
{{STRUCTURE_1q8s| PDB=1q8s |  SCENE= }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1q8s FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1q8s OCA], [https://pdbe.org/1q8s PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1q8s RCSB], [https://www.ebi.ac.uk/pdbsum/1q8s PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1q8s ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/Q8GSD2_PTEAG Q8GSD2_PTEAG]
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/q8/1q8s_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1q8s ConSurf].
<div style="clear:both"></div>


===Pterocarpus angolensis lectin (PAL) in complex with the dimannoside Man(alpha1-6)Man===
==See Also==
 
*[[Pal|Pal]]
 
__TOC__
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</StructureSection>
The line below this paragraph, {{ABSTRACT_PUBMED_14729339}}, adds the Publication Abstract to the page
[[Category: Large Structures]]
(as it appears on PubMed at http://www.pubmed.gov), where 14729339 is the PubMed ID number.
-->
{{ABSTRACT_PUBMED_14729339}}
 
==About this Structure==
1Q8S is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Pterocarpus_angolensis Pterocarpus angolensis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Q8S OCA].
 
==Reference==
Structural basis of oligomannose recognition by the Pterocarpus angolensis seed lectin., Loris R, Van Walle I, De Greve H, Beeckmans S, Deboeck F, Wyns L, Bouckaert J, J Mol Biol. 2004 Jan 30;335(5):1227-40. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/14729339 14729339]
[[Category: Pterocarpus angolensis]]
[[Category: Pterocarpus angolensis]]
[[Category: Single protein]]
[[Category: Beeckmans S]]
[[Category: Beeckmans, S.]]
[[Category: Bouckaert J]]
[[Category: Bouckaert, J.]]
[[Category: De Greve H]]
[[Category: DeBoeck, F.]]
[[Category: DeBoeck F]]
[[Category: Greve, H De.]]
[[Category: Loris R]]
[[Category: Loris, R.]]
[[Category: Van Walle I]]
[[Category: Walle, I Van.]]
[[Category: Wyns L]]
[[Category: Wyns, L.]]
[[Category: Carbohydrate]]
[[Category: Lectin]]
[[Category: Mannose]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Jul 29 05:09:26 2008''

Latest revision as of 09:02, 17 April 2024

Pterocarpus angolensis lectin (PAL) in complex with the dimannoside Man(alpha1-6)ManPterocarpus angolensis lectin (PAL) in complex with the dimannoside Man(alpha1-6)Man

Structural highlights

1q8s is a 2 chain structure with sequence from Pterocarpus angolensis. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 2.05Å
Ligands:, , , ,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

Q8GSD2_PTEAG

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

See Also

1q8s, resolution 2.05Å

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