1ogk: Difference between revisions

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-[[Image:1ogk.png|left|200px]]
-<!--
+==The crystal structure of Trypanosoma cruzi dUTPase in complex with dUDP==
-The line below this paragraph, containing "STRUCTURE_1ogk", creates the "Structure Box" on the page.
+<StructureSection load='1ogk' size='340' side='right'caption='[[1ogk]], [[Resolution|resolution]] 2.85&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[1ogk]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Trypanosoma_cruzi Trypanosoma cruzi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OGK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1OGK FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.85&#8491;</td></tr>
--->
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=DUD:DEOXYURIDINE-5-DIPHOSPHATE'>DUD</scene></td></tr>
-{{STRUCTURE_1ogk|  PDB=1ogk  |  SCENE=  }}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ogk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ogk OCA], [https://pdbe.org/1ogk PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ogk RCSB], [https://www.ebi.ac.uk/pdbsum/1ogk PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ogk ProSAT]</span></td></tr>
+</table>
-===THE CRYSTAL STRUCTURE OF TRYPANOSOMA CRUZI DUTPASE IN COMPLEX WITH DUDP===
+== Function ==
+[https://www.uniprot.org/uniprot/O15923_TRYCR O15923_TRYCR]
+== Evolutionary Conservation ==
-<!--
+[[Image:Consurf_key_small.gif|200px|right]]
-The line below this paragraph, {{ABSTRACT_PUBMED_14725764}}, adds the Publication Abstract to the page
+Check<jmol>
-(as it appears on PubMed at http://www.pubmed.gov), where 14725764 is the PubMed ID number.
+  <jmolCheckbox>
--->
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/og/1ogk_consurf.spt"</scriptWhenChecked>
-{{ABSTRACT_PUBMED_14725764}}
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
-==About this Structure==
+  </jmolCheckbox>
-[[1ogk]] is a 4 chain structure of [[Deoxyuridine 5'-triphosphate nucleotidohydrolase]] with sequence from [http://en.wikipedia.org/wiki/Trypanosoma_cruzi Trypanosoma cruzi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OGK OCA].
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1ogk ConSurf].
+<div style="clear:both"></div>
 ==See Also==
-*[[Deoxyuridine 5'-triphosphate nucleotidohydrolase|Deoxyuridine 5'-triphosphate nucleotidohydrolase]]
+*[[DUTPase 3D structures|DUTPase 3D structures]]
+__TOC__
-==Reference==
+</StructureSection>
-<ref group="xtra">PMID:014725764</ref><references group="xtra"/>
+[[Category: Large Structures]]
 [[Category: Trypanosoma cruzi]]
-[[Category: DUTP diphosphatase]]
+[[Category: Bernier-Villamor V]]
-[[Category: Bernier-Villamor, V.]]
+[[Category: Dodson EJ]]
-[[Category: Dodson, E J.]]
+[[Category: Gonzalez-Pacanowska D]]
-[[Category: Gonzalez-Pacanowska, D.]]
+[[Category: Harkiolaki M]]
-[[Category: Harkiolaki, M.]]
+[[Category: Turkenburg JP]]
-[[Category: Turkenburg, J P.]]
+[[Category: Wilson KS]]
-[[Category: Wilson, K S.]]
-[[Category: Dimer]]
-[[Category: Hydrolase]]