1oaj: Difference between revisions

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[[Image:1oaj.png|left|200px]]


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==Active site copper and zinc ions modulate the quaternary structure of prokaryotic Cu,Zn superoxide dismutase==
The line below this paragraph, containing "STRUCTURE_1oaj", creates the "Structure Box" on the page.
<StructureSection load='1oaj' size='340' side='right'caption='[[1oaj]], [[Resolution|resolution]] 1.73&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[1oaj]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Photobacterium_leiognathi_subsp._leiognathi Photobacterium leiognathi subsp. leiognathi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OAJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1OAJ FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.73&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
{{STRUCTURE_1oaj|  PDB=1oaj  | SCENE= }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1oaj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1oaj OCA], [https://pdbe.org/1oaj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1oaj RCSB], [https://www.ebi.ac.uk/pdbsum/1oaj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1oaj ProSAT]</span></td></tr>
 
</table>
===ACTIVE SITE COPPER AND ZINC IONS MODULATE THE QUATERNARY STRUCTURE OF PROKARYOTIC CU,ZN SUPEROXIDE DISMUTASE===
== Function ==
 
[https://www.uniprot.org/uniprot/SODC_PHOLE SODC_PHOLE] Destroys radicals which are normally produced within the cells and which are toxic to biological systems.
 
== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
The line below this paragraph, {{ABSTRACT_PUBMED_12595249}}, adds the Publication Abstract to the page
Check<jmol>
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    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/oa/1oaj_consurf.spt"</scriptWhenChecked>
{{ABSTRACT_PUBMED_12595249}}
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 
    <text>to colour the structure by Evolutionary Conservation</text>
==About this Structure==
  </jmolCheckbox>
[[1oaj]] is a 1 chain structure of [[Superoxide Dismutase]] with sequence from [http://en.wikipedia.org/wiki/Photobacterium_leiognathi Photobacterium leiognathi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OAJ OCA].  
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1oaj ConSurf].
<div style="clear:both"></div>


==See Also==
==See Also==
*[[Superoxide Dismutase]]
*[[Superoxide dismutase 3D structures|Superoxide dismutase 3D structures]]
 
__TOC__
==Reference==
</StructureSection>
<ref group="xtra">PMID:12595249</ref><references group="xtra"/>
[[Category: Large Structures]]
[[Category: Photobacterium leiognathi]]
[[Category: Photobacterium leiognathi subsp. leiognathi]]
[[Category: Superoxide dismutase]]
[[Category: Bolognesi M]]
[[Category: Bolognesi, M.]]
[[Category: Castelli S]]
[[Category: Castelli, S.]]
[[Category: Cioni P]]
[[Category: Cioni, P.]]
[[Category: Desideri A]]
[[Category: Desideri, A.]]
[[Category: Falconi M]]
[[Category: Falconi, M.]]
[[Category: Parrilli L]]
[[Category: Parrilli, L.]]
[[Category: Pesce A]]
[[Category: Pesce, A.]]
[[Category: Rocca BMD]]
[[Category: Rocca, B M.D.]]
[[Category: Strambini G]]
[[Category: Strambini, G.]]
[[Category: Oxidoreductase]]
[[Category: Prokariotic cu]]
[[Category: Protein electrostatic]]
[[Category: Subunit interaction recognition]]
[[Category: Zn superoxide dismutase]]

Latest revision as of 11:56, 10 April 2024

Active site copper and zinc ions modulate the quaternary structure of prokaryotic Cu,Zn superoxide dismutaseActive site copper and zinc ions modulate the quaternary structure of prokaryotic Cu,Zn superoxide dismutase

Structural highlights

1oaj is a 1 chain structure with sequence from Photobacterium leiognathi subsp. leiognathi. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 1.73Å
Ligands:,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

SODC_PHOLE Destroys radicals which are normally produced within the cells and which are toxic to biological systems.

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

See Also

1oaj, resolution 1.73Å

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OCA
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