1ms9: Difference between revisions

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

@@ Line 1: / Line 1: @@
-[[Image:1ms9.png|left|200px]]
-<!--
+==Triclinic form of Trypanosoma cruzi trans-sialidase, in complex with lactose==
-The line below this paragraph, containing "STRUCTURE_1ms9", creates the "Structure Box" on the page.
+<StructureSection load='1ms9' size='340' side='right'caption='[[1ms9]], [[Resolution|resolution]] 1.58&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[1ms9]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Trypanosoma_cruzi Trypanosoma cruzi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1MS9 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1MS9 FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.58&#8491;</td></tr>
--->
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BGC:BETA-D-GLUCOSE'>BGC</scene>, <scene name='pdbligand=GAL:BETA-D-GALACTOSE'>GAL</scene>, <scene name='pdbligand=PRD_900004:beta-lactose'>PRD_900004</scene></td></tr>
-{{STRUCTURE_1ms9|  PDB=1ms9  |  SCENE=  }}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ms9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ms9 OCA], [https://pdbe.org/1ms9 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ms9 RCSB], [https://www.ebi.ac.uk/pdbsum/1ms9 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ms9 ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/Q26966_TRYCR Q26966_TRYCR]
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ms/1ms9_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1ms9 ConSurf].
+<div style="clear:both"></div>
-===Triclinic form of Trypanosoma cruzi trans-sialidase, in complex with lactose===
+==See Also==
+*[[Neuraminidase 3D structures|Neuraminidase 3D structures]]
+__TOC__
-<!--
+</StructureSection>
-The line below this paragraph, {{ABSTRACT_PUBMED_12419220}}, adds the Publication Abstract to the page
+[[Category: Large Structures]]
-(as it appears on PubMed at http://www.pubmed.gov), where 12419220 is the PubMed ID number.
--->
-{{ABSTRACT_PUBMED_12419220}}
-==About this Structure==
-[[1ms9]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Trypanosoma_cruzi Trypanosoma cruzi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1MS9 OCA].
-==Reference==
-<ref group="xtra">PMID:012419220</ref><references group="xtra"/>
-[[Category: Exo-alpha-sialidase]]
 [[Category: Trypanosoma cruzi]]
-[[Category: Alzari, P M.]]
+[[Category: Alzari PM]]
-[[Category: Amaya, M F.]]
+[[Category: Amaya MF]]
-[[Category: Buschiazzo, A.]]
+[[Category: Buschiazzo A]]
-[[Category: Cremona, M L.]]
+[[Category: Cremona ML]]
-[[Category: Frasch, A C.]]
+[[Category: Frasch AC]]
-[[Category: Beta-propeller]]
-[[Category: Hydrolase]]
-[[Category: Protein-acrbohydrate interaction]]
-[[Category: Sialidase]]
-[[Category: Trans-glycosylation]]