1m54: Difference between revisions

New page: left|200px<br /> <applet load="1m54" size="450" color="white" frame="true" align="right" spinBox="true" caption="1m54, resolution 2.90Å" /> '''CYSTATHIONINE-BETA ...
 
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'''CYSTATHIONINE-BETA SYNTHASE: REDUCED VICINAL THIOLS'''<br />


==Overview==
==CYSTATHIONINE-BETA SYNTHASE: REDUCED VICINAL THIOLS==
Elevated levels of homocysteine, a sulfur-containing amino acid, are, correlated with increased risk for cardiovascular diseases and Alzheimers, disease and with neural tube defects. The only route for the catabolic, removal of homocysteine in mammals begins with the pyridoxal phosphate-, (PLP-) dependent beta-replacement reaction catalyzed by cystathionine, beta-synthase. The enzyme has a b-type heme with unusual spectroscopic, properties but as yet unknown function. The human enzyme has a modular, organization and can be cleaved into an N-terminal catalytic core, which, retains both the heme and PLP-binding sites and is highly active, and a, C-terminal regulatory domain, where the allosteric activator, S-adenosylmethionine is presumed to bind. Studies with the isolated, recombinant enzyme and in transformed human liver cells indicate that the, enzyme is approximately 2-fold more active under oxidizing conditions. In, addition to heme, the enzyme contains a CXXC oxidoreductase motif that, could, in principle, be involved in redox sensing. In this study, we have, examined the role of heme versus the vicinal thiols in modulating the, redox responsiveness of the enzyme. Deletion of the heme domain leads to, loss of redox sensitivity. In contrast, substitution of either cysteine, with a non-redox-active amino acid does not affect the responsiveness of, the enzyme to reductants. We also report the crystal structure of the, catalytic core of the enzyme in which the vicinal cysteines are reduced, without any discernible differences in the remainder of the protein. The, structure of the catalytic core is compared to those of other members of, the fold II family of PLP-dependent enzymes and provides insights into, active site residues that may be important in interacting with the, substrates and intermediates.
<StructureSection load='1m54' size='340' side='right'caption='[[1m54]], [[Resolution|resolution]] 2.90&Aring;' scene=''>
== Structural highlights ==
<table><tr><td colspan='2'>[[1m54]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1M54 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1M54 FirstGlance]. <br>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.9&#8491;</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=PLP:PYRIDOXAL-5-PHOSPHATE'>PLP</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1m54 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1m54 OCA], [https://pdbe.org/1m54 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1m54 RCSB], [https://www.ebi.ac.uk/pdbsum/1m54 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1m54 ProSAT]</span></td></tr>
</table>
== Disease ==
[https://www.uniprot.org/uniprot/CBS_HUMAN CBS_HUMAN] Defects in CBS are the cause of cystathionine beta-synthase deficiency (CBSD) [MIM:[https://omim.org/entry/236200 236200]. CBSD is an enzymatic deficiency resulting in altered sulfur metabolism and homocystinuria. The clinical features of untreated homocystinuria due to CBS deficiency include myopia, ectopia lentis, mental retardation, skeletal anomalies resembling Marfan syndrome, and thromboembolic events. Light skin and hair can also be present. Biochemical features include increased urinary homocystine and methionine.<ref>PMID:1301198</ref> <ref>PMID:8353501</ref> <ref>PMID:7506602</ref> <ref>PMID:7981678</ref> <ref>PMID:7849717</ref> <ref>PMID:7967489</ref> <ref>PMID:7611293</ref> <ref>PMID:7762555</ref> <ref>PMID:7635485</ref> <ref>PMID:8528202</ref> <ref>PMID:7564249</ref> <ref>PMID:8755636</ref> <ref>PMID:8803779</ref> <ref>PMID:9156316</ref> <ref>PMID:9361025</ref> <ref>PMID:8990018</ref> <ref>PMID:9266356</ref> <ref>PMID:10462600</ref> <ref>PMID:10215408</ref> <ref>PMID:9889017</ref> <ref>PMID:10408774</ref> <ref>PMID:11013450</ref> <ref>PMID:11359213</ref> <ref>PMID:11553052</ref> <ref>PMID:12007221</ref> <ref>PMID:12124992</ref> <ref>PMID:12815602</ref> <ref>PMID:14635102</ref> <ref>PMID:15146473</ref> <ref>PMID:15365998</ref> <ref>PMID:15993874</ref> <ref>PMID:16205833</ref> <ref>PMID:16429402</ref> <ref>PMID:21520339</ref> <ref>PMID:21240075</ref>
== Function ==
[https://www.uniprot.org/uniprot/CBS_HUMAN CBS_HUMAN] Only known pyridoxal phosphate-dependent enzyme that contains heme. Important regulator of hydrogen sulfide, especially in the brain, utilizing cysteine instead of serine to catalyze the formation of hydrogen sulfide. Hydrogen sulfide is a gastratransmitter with signaling and cytoprotective effects such as acting as a neuromodulator in the brain to protect neurons against hypoxic injury (By similarity).
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/m5/1m54_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1m54 ConSurf].
<div style="clear:both"></div>


==Disease==
==See Also==
Known diseases associated with this structure: Homocystinuria, B6-responsive and nonresponsive types OMIM:[[http://www.ncbi.nlm.nih.gov/entrez/dispomim.cgi?id=236200 236200]], Thrombosis, hyperhomocysteinemic OMIM:[[http://www.ncbi.nlm.nih.gov/entrez/dispomim.cgi?id=236200 236200]]
*[[Cystathionine β-synthase 3D structures|Cystathionine β-synthase 3D structures]]
 
== References ==
==About this Structure==
<references/>
1M54 is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] with PLP and HEM as [http://en.wikipedia.org/wiki/ligands ligands]. Active as [http://en.wikipedia.org/wiki/Cystathionine_beta-synthase Cystathionine beta-synthase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.2.1.22 4.2.1.22] Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1M54 OCA].
__TOC__
 
</StructureSection>
==Reference==
Human cystathionine beta-synthase is a heme sensor protein. Evidence that the redox sensor is heme and not the vicinal cysteines in the CXXC motif seen in the crystal structure of the truncated enzyme., Taoka S, Lepore BW, Kabil O, Ojha S, Ringe D, Banerjee R, Biochemistry. 2002 Aug 20;41(33):10454-61. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=12173932 12173932]
[[Category: Cystathionine beta-synthase]]
[[Category: Homo sapiens]]
[[Category: Homo sapiens]]
[[Category: Single protein]]
[[Category: Large Structures]]
[[Category: Banerjee, R.]]
[[Category: Banerjee R]]
[[Category: Kabil, O.]]
[[Category: Kabil O]]
[[Category: Lepore, B.W.]]
[[Category: Lepore BW]]
[[Category: Ojha, S.]]
[[Category: Ojha S]]
[[Category: Ringe, D.]]
[[Category: Ringe D]]
[[Category: Taoka, S.]]
[[Category: Taoka S]]
[[Category: HEM]]
[[Category: PLP]]
[[Category: plp and heme bound to protein]]
[[Category: plp protein fold type ii (tryptophan synthase)]]
[[Category: reduced vicinal cysteines]]
 
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