1xmq: Difference between revisions

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-[[Image:1xmq.png|left|200px]]
-<!--
+==Crystal Structure of t6A37-ASLLysUUU AAA-mRNA Bound to the Decoding Center==
-The line below this paragraph, containing "STRUCTURE_1xmq", creates the "Structure Box" on the page.
+<StructureSection load='1xmq' size='340' side='right'caption='[[1xmq]], [[Resolution|resolution]] 3.00&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[1xmq]] is a 10 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus] and [https://en.wikipedia.org/wiki/Thermus_thermophilus_HB8 Thermus thermophilus HB8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XMQ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1XMQ FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3&#8491;</td></tr>
--->
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=PAR:PAROMOMYCIN'>PAR</scene>, <scene name='pdbligand=T6A:N-[N-(9-B-D-RIBOFURANOSYLPURIN-6-YL)CARBAMOYL]THREONINE-5-MONOPHOSPHATE'>T6A</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-{{STRUCTURE_1xmq|  PDB=1xmq  |  SCENE=  }}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1xmq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xmq OCA], [https://pdbe.org/1xmq PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1xmq RCSB], [https://www.ebi.ac.uk/pdbsum/1xmq PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1xmq ProSAT]</span></td></tr>
+</table>
-===Crystal Structure of t6A37-ASLLysUUU AAA-mRNA Bound to the Decoding Center===
+== Function ==
+[https://www.uniprot.org/uniprot/RS2_THET8 RS2_THET8] Spans the head-body hinge region of the 30S subunit. Is loosely associated with the 30S subunit.[HAMAP-Rule:MF_00291_B]
+== Evolutionary Conservation ==
-<!--
+[[Image:Consurf_key_small.gif|200px|right]]
-The line below this paragraph, {{ABSTRACT_PUBMED_15558052}}, adds the Publication Abstract to the page
+Check<jmol>
-(as it appears on PubMed at http://www.pubmed.gov), where 15558052 is the PubMed ID number.
+  <jmolCheckbox>
--->
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/xm/1xmq_consurf.spt"</scriptWhenChecked>
-{{ABSTRACT_PUBMED_15558052}}
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
-==About this Structure==
+  </jmolCheckbox>
-[[1xmq]] is a 23 chain structure of [[Ribosomal protein S10]], [[Ribosomal protein S11]], [[Ribosomal protein S12]], [[Ribosomal protein S13]], [[Ribosomal protein S15]], [[Ribosomal protein S17]], [[Ribosomal protein S2]], [[Ribosomal protein S20]], [[Ribosomal protein S3]], [[Ribosomal protein S4]] and [[Ribosomal protein THX]] with sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus] and [http://en.wikipedia.org/wiki/Thermus_thermophilus_hb8 Thermus thermophilus hb8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XMQ OCA].
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1xmq ConSurf].
+<div style="clear:both"></div>
 ==See Also==
-*[[Ribosomal protein S10]]
+*[[Ribosomal protein THX 3D structures|Ribosomal protein THX 3D structures]]
-*[[Ribosomal protein S11]]
+__TOC__
-*[[Ribosomal protein S12]]
+</StructureSection>
-*[[Ribosomal protein S13]]
+[[Category: Large Structures]]
-*[[Ribosomal protein S15]]
-*[[Ribosomal protein S17]]
-*[[Ribosomal protein S2]]
-*[[Ribosomal protein S20]]
-*[[Ribosomal protein S3]]
-*[[Ribosomal protein S4]]
-*[[Ribosomal protein THX]]
-==Reference==
-<ref group="xtra">PMID:15558052</ref><references group="xtra"/>
 [[Category: Thermus thermophilus]]
-[[Category: Thermus thermophilus hb8]]
+[[Category: Thermus thermophilus HB8]]
-[[Category: Agris, P F.]]
+[[Category: Agris PF]]
-[[Category: Malkiewicz, A.]]
+[[Category: Malkiewicz A]]
-[[Category: Murphy, F V.]]
+[[Category: Murphy FV]]
-[[Category: Ramakrishnan, V.]]
+[[Category: Ramakrishnan V]]
-[[Category: Decoding]]
-[[Category: Modified trna]]
-[[Category: Ribosome]]