1uf2: Difference between revisions

From Proteopedia
Jump to navigation Jump to search
← Older edit
No edit summary
No edit summary
 
(8 intermediate revisions by the same user not shown)
Line 1: Line 1:
==The Atomic Structure of Rice dwarf Virus (RDV)==
==The Atomic Structure of Rice dwarf Virus (RDV)==
<StructureSection load='1uf2' size='340' side='right' caption='[[1uf2]], [[Resolution|resolution]] 3.50&Aring;' scene=''>
<SX load='1uf2' size='340' side='right' viewer='molstar' caption='[[1uf2]], [[Resolution|resolution]] 3.50&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[1uf2]] is a 16 chain structure with sequence from [http://en.wikipedia.org/wiki/Rice_dwarf_virus Rice dwarf virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1UF2 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1UF2 FirstGlance]. <br>
<table><tr><td colspan='2'>[[1uf2]] is a 16 chain structure with sequence from [https://en.wikipedia.org/wiki/Rice_dwarf_virus Rice dwarf virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1UF2 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1UF2 FirstGlance]. <br>
</td></tr><tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1uf2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1uf2 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1uf2 RCSB], [http://www.ebi.ac.uk/pdbsum/1uf2 PDBsum]</span></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.5&#8491;</td></tr>
<table>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1uf2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1uf2 OCA], [https://pdbe.org/1uf2 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1uf2 RCSB], [https://www.ebi.ac.uk/pdbsum/1uf2 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1uf2 ProSAT]</span></td></tr>
<div style="background-color:#fffaf0;">
</table>
== Publication Abstract from PubMed ==
== Function ==
Rice dwarf virus (RDV), the causal agent of rice dwarf disease, is a member of the genus Phytoreovirus in the family Reoviridae. RDV is a double-shelled virus with a molecular mass of approximately 70 million Dalton. This virus is widely prevalent and is one of the viruses that cause the most economic damage in many Asian countries. The atomic structure of RDV was determined at 3.5 A resolution by X-ray crystallography. The double-shelled structure consists of two different proteins, the core protein P3 and the outer shell protein P8. The atomic structure shows structural and electrostatic complementarities between both homologous (P3-P3 and P8-P8) and heterologous (P3-P8) interactions, as well as overall conformational changes found in P3-P3 dimer caused by the insertion of amino-terminal loop regions of one of the P3 protein into the other. These interactions suggest how the 900 protein components are built into a higher-ordered virus core structure.
[https://www.uniprot.org/uniprot/P3_RDVA P3_RDVA] Capsid protein which self-assembles to form the inner icosahedral capsid with a T=2 symmetry, and consisting of 60 P3 dimers.<ref>PMID:14527391</ref>  
 
The atomic structure of rice dwarf virus reveals the self-assembly mechanism of component proteins.,Nakagawa A, Miyazaki N, Taka J, Naitow H, Ogawa A, Fujimoto Z, Mizuno H, Higashi T, Watanabe Y, Omura T, Cheng RH, Tsukihara T Structure. 2003 Oct;11(10):1227-38. PMID:14527391<ref>PMID:14527391</ref>
 
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>


==See Also==
==See Also==
*[[Virus coat protein|Virus coat protein]]
*[[Virus coat proteins 3D structures|Virus coat proteins 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</SX>
[[Category: Large Structures]]
[[Category: Rice dwarf virus]]
[[Category: Rice dwarf virus]]
[[Category: Cheng, R H.]]
[[Category: Cheng RH]]
[[Category: Fujimoto, Z.]]
[[Category: Fujimoto Z]]
[[Category: Higashi, T.]]
[[Category: Higashi T]]
[[Category: Miyazaki, N.]]
[[Category: Miyazaki N]]
[[Category: Mizuno, H.]]
[[Category: Mizuno H]]
[[Category: Naitow, H.]]
[[Category: Naitow H]]
[[Category: Nakagawa, A.]]
[[Category: Nakagawa A]]
[[Category: Ogawa, A.]]
[[Category: Ogawa A]]
[[Category: Omura, T.]]
[[Category: Omura T]]
[[Category: Taka, J.]]
[[Category: Taka J]]
[[Category: Tsukihara, T.]]
[[Category: Tsukihara T]]
[[Category: Watanabe, Y.]]
[[Category: Watanabe Y]]
[[Category: Icosahedral virus]]
[[Category: Virus]]
[[Category: Virus component]]

Latest revision as of 09:16, 3 April 2024

The Atomic Structure of Rice dwarf Virus (RDV)The Atomic Structure of Rice dwarf Virus (RDV)

1uf2, resolution 3.50Å

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA
Retrieved from "https://proteopedia.openfox.io/wiki/index.php?title=1uf2&oldid=4118291"