1dnv: Difference between revisions

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[[Image:1dnv.png|left|200px]]


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==PARVOVIRUS (DENSOVIRUS) FROM GALLERIA MELLONELLA==
The line below this paragraph, containing "STRUCTURE_1dnv", creates the "Structure Box" on the page.
<StructureSection load='1dnv' size='340' side='right'caption='[[1dnv]], [[Resolution|resolution]] 3.60&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[1dnv]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Galleria_mellonella_densovirus Galleria mellonella densovirus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DNV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1DNV FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.6&#8491;</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1dnv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1dnv OCA], [https://pdbe.org/1dnv PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1dnv RCSB], [https://www.ebi.ac.uk/pdbsum/1dnv PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1dnv ProSAT]</span></td></tr>
{{STRUCTURE_1dnv| PDB=1dnv |  SCENE= }}
</table>
== Function ==
[https://www.uniprot.org/uniprot/CAPSD_GMDNV CAPSD_GMDNV] Capsid protein self-assembles to form an icosahedral capsid with a T=1 symmetry, about 22 nm in diameter, and consisting of 60 copies of size variants of the capsid proteins, which differ in the N-terminushe capsid encapsulates the genomic ssDNA. Capsid proteins are responsible for the attachment to host cell receptors. This attachment induces virion internalization predominantly through clathrin-dependent endocytosis (By similarity).
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dn/1dnv_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1dnv ConSurf].
<div style="clear:both"></div>


===PARVOVIRUS (DENSOVIRUS) FROM GALLERIA MELLONELLA===
==See Also==
 
*[[Virus coat proteins 3D structures|Virus coat proteins 3D structures]]
 
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{{ABSTRACT_PUBMED_9817847}}
 
==About this Structure==
1DNV is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Galleria_mellonella_densovirus Galleria mellonella densovirus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DNV OCA].
 
==Reference==
The structure of an insect parvovirus (Galleria mellonella densovirus) at 3.7 A resolution., Simpson AA, Chipman PR, Baker TS, Tijssen P, Rossmann MG, Structure. 1998 Nov 15;6(11):1355-67. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/9817847 9817847]
[[Category: Galleria mellonella densovirus]]
[[Category: Galleria mellonella densovirus]]
[[Category: Single protein]]
[[Category: Large Structures]]
[[Category: Baker, T S.]]
[[Category: Baker TS]]
[[Category: Chipmann, P R.]]
[[Category: Chipmann PR]]
[[Category: Rossmann, M G.]]
[[Category: Rossmann MG]]
[[Category: Simpson, A A.]]
[[Category: Simpson AA]]
[[Category: Tijssen, P.]]
[[Category: Tijssen P]]
[[Category: Capsid protein]]
[[Category: Densovirus]]
[[Category: Icosahedral virus]]
[[Category: Parvovirus]]
[[Category: Viral capsid]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Jun 30 23:20:58 2008''

Latest revision as of 08:58, 3 April 2024

PARVOVIRUS (DENSOVIRUS) FROM GALLERIA MELLONELLAPARVOVIRUS (DENSOVIRUS) FROM GALLERIA MELLONELLA

Structural highlights

1dnv is a 1 chain structure with sequence from Galleria mellonella densovirus. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 3.6Å
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

CAPSD_GMDNV Capsid protein self-assembles to form an icosahedral capsid with a T=1 symmetry, about 22 nm in diameter, and consisting of 60 copies of size variants of the capsid proteins, which differ in the N-terminushe capsid encapsulates the genomic ssDNA. Capsid proteins are responsible for the attachment to host cell receptors. This attachment induces virion internalization predominantly through clathrin-dependent endocytosis (By similarity).

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

See Also

1dnv, resolution 3.60Å

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