1b77: Difference between revisions

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

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-[[Image:1b77.gif|left|200px]]<br /><applet load="1b77" size="450" color="white" frame="true" align="right" spinBox="true"
-caption="1b77, resolution 2.10&Aring;" />
-'''BUILDING A REPLISOME STRUCTURE FROM INTERACTING PIECES: A SLIDING CLAMP COMPLEXED WITH AN INTERACTION PEPTIDE FROM DNA POLYMERASE'''<br />
-==Overview==
+==BUILDING A REPLISOME STRUCTURE FROM INTERACTING PIECES: A SLIDING CLAMP COMPLEXED WITH AN INTERACTION PEPTIDE FROM DNA POLYMERASE==
-We have solved the crystal structures of the bacteriophage RB69 sliding, clamp, its complex with a peptide essential for DNA polymerase, interactions, and the DNA polymerase complexed with primer-template DNA., The editing complex structure shows a partially melted duplex DNA exiting, from the exonuclease domain at an unexpected angle and significant changes, in the protein structure. The clamp complex shows the C-terminal 11, residues of polymerase bound in a hydrophobic pocket, and it allows, docking of the editing and clamp structures together. The peptide binds to, the sliding clamp at a position identical to that of a replication, inhibitor peptide bound to PCNA, suggesting that the replication inhibitor, protein p21CIP1 functions by competing with eukaryotic polymerases for the, same binding pocket on the clamp.
+<StructureSection load='1b77' size='340' side='right'caption='[[1b77]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
+== Structural highlights ==
-==About this Structure==
+<table><tr><td colspan='2'>[[1b77]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_phage_RB69 Escherichia phage RB69]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1B77 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1B77 FirstGlance]. <br>
-B77 is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Enterobacteria_phage_rb18 Enterobacteria phage rb18]. Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1B77 OCA].
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1&#8491;</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1b77 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1b77 OCA], [https://pdbe.org/1b77 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1b77 RCSB], [https://www.ebi.ac.uk/pdbsum/1b77 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1b77 ProSAT]</span></td></tr>
-==Reference==
+</table>
-Building a replisome from interacting pieces: sliding clamp complexed to a peptide from DNA polymerase and a polymerase editing complex., Shamoo Y, Steitz TA, Cell. 1999 Oct 15;99(2):155-66. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=10535734 10535734]
+== Function ==
-[[Category: Enterobacteria phage rb18]]
+[https://www.uniprot.org/uniprot/CLAMP_BPR69 CLAMP_BPR69] Sliding clamp that encircles the genomic DNA and links the DNA polymerase to the template to control the processivity of DNA synthesis. Responsible for tethering the catalytic subunit of DNA polymerase to DNA during high-speed replication. Interaction with the sliding-clamp-loader opens the sliding clamp so that it can be loaded around the DNA template. During transcription, encircles the DNA and tethers host RNA polymerase (RNAP) to it.[HAMAP-Rule:MF_04161]
-[[Category: Single protein]]
+== Evolutionary Conservation ==
-[[Category: Shamoo, Y.]]
+[[Image:Consurf_key_small.gif|200px|right]]
-[[Category: Steitz, T.A.]]
+Check<jmol>
-[[Category: gp45]]
+  <jmolCheckbox>
-[[Category: replisome]]
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/b7/1b77_consurf.spt"</scriptWhenChecked>
-[[Category: sliding clamp]]
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
-''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Tue Nov 20 11:25:16 2007''
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1b77 ConSurf].
+<div style="clear:both"></div>
+__TOC__
+</StructureSection>
+[[Category: Escherichia phage RB69]]
+[[Category: Large Structures]]
+[[Category: Shamoo Y]]
+[[Category: Steitz TA]]