1hg1: Difference between revisions

← Older edit

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

@@ Line 1: / Line 1: @@
-{{Seed}}
-[[Image:1hg1.png|left|200px]]
-<!--
+==X-ray structure of the complex between Erwinia chrysanthemi L-asparaginase and D-aspartate==
-The line below this paragraph, containing "STRUCTURE_1hg1", creates the "Structure Box" on the page.
+<StructureSection load='1hg1' size='340' side='right'caption='[[1hg1]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[1hg1]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Dickeya_chrysanthemi Dickeya chrysanthemi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1HG1 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1HG1 FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
--->
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=DAS:D-ASPARTIC+ACID'>DAS</scene></td></tr>
-{{STRUCTURE_1hg1|  PDB=1hg1  |  SCENE=  }}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1hg1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1hg1 OCA], [https://pdbe.org/1hg1 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1hg1 RCSB], [https://www.ebi.ac.uk/pdbsum/1hg1 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1hg1 ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/ASPG_DICCH ASPG_DICCH]
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/hg/1hg1_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1hg1 ConSurf].
+<div style="clear:both"></div>
-===X-RAY STRUCTURE OF THE COMPLEX BETWEEN ERWINIA CHRYSANTHEMI L-ASPARAGINASE AND D-ASPARTATE===
+==See Also==
+*[[Asparaginase 3D structures|Asparaginase 3D structures]]
+__TOC__
-<!--
+</StructureSection>
-The line below this paragraph, {{ABSTRACT_PUBMED_11341830}}, adds the Publication Abstract to the page
+[[Category: Dickeya chrysanthemi]]
-(as it appears on PubMed at http://www.pubmed.gov), where 11341830 is the PubMed ID number.
+[[Category: Large Structures]]
--->
+[[Category: Kolyani KA]]
-{{ABSTRACT_PUBMED_11341830}}
+[[Category: Lubkowski J]]
+[[Category: Wlodawer A]]
-==About this Structure==
-HG1 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Erwinia_chrysanthemi Erwinia chrysanthemi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1HG1 OCA].
-==Reference==
-Structural basis for the activity and substrate specificity of Erwinia chrysanthemi L-asparaginase., Aghaiypour K, Wlodawer A, Lubkowski J, Biochemistry. 2001 May 15;40(19):5655-64. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/11341830 11341830]
-[[Category: Asparaginase]]
-[[Category: Erwinia chrysanthemi]]
-[[Category: Single protein]]
-[[Category: Kolyani, K A.]]
-[[Category: Lubkowski, J.]]
-[[Category: Wlodawer, A.]]
-[[Category: Asparaginase]]
-[[Category: Complex]]
-[[Category: D-aspartate]]
-[[Category: Hydrolase]]
-[[Category: Structure]]
-[[Category: X-ray]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Jul  1 08:08:25 2008''