1g03: Difference between revisions

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New page: left|200px<br /><applet load="1g03" size="450" color="white" frame="true" align="right" spinBox="true" caption="1g03" /> '''NMR STRUCTURE OF N-TERMINAL DOMAIN OF HTLV-I...
 
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[[Image:1g03.jpg|left|200px]]<br /><applet load="1g03" size="450" color="white" frame="true" align="right" spinBox="true"
caption="1g03" />
'''NMR STRUCTURE OF N-TERMINAL DOMAIN OF HTLV-I CA1-134'''<br />


==Overview==
==NMR STRUCTURE OF N-TERMINAL DOMAIN OF HTLV-I CA1-134==
The N-terminal domain of the retroviral capsid (CA) protein is one of the, least conserved regions encoded in the genome. Surprisingly, the, three-dimensional structures of the CA from different genera exhibit, alpha-helical structural features that are highly conserved. The, N-terminal residues of the human immunodeficiency virus type 1 (HIV-1) and, Rous sarcoma virus (RSV) capsid proteins form a beta-hairpin. To determine, if this feature is conserved in the retroviral family, we cloned, expressed, purified, and solved the structure of a N-terminal 134 amino, acid fragment (CA(134)) from the human T-cell leukemia virus type 1, (HTLV-I) using high resolution nuclear magnetic resonance (NMR), spectroscopy. The CA(134) fragment contains an N-terminal beta-hairpin and, a central coiled-coil-like structure composed of six alpha-helices. The, N-terminal Pro1 residue contacts Asp54 in the helical cluster through a, salt bridge. Thus, the beta-hairpin is conserved and the helical cluster, is structurally similar to other retroviral CA domains. However, although, the same Asp residue defines the orientation of the hairpin in both the, HTLV-1 and HIV-1 CA proteins, the HTLV-I hairpin is oriented away, rather, than towards, the helical core. Significant differences were also detected, in the spatial orientation and helical content of the long centrally, located loop connecting the helices in the core. It has been proposed that, the salt bridge allows the formation of a CA-CA interface that is, important for the assembly of the conical cores that are characteristic of, HIV-1. As HTLV-I forms spherical cores, the salt-bridge feature is, apparently not conserved for this function although its role in, determining the orientation of the beta-hairpin may be critical, along, with the central loop. Comparison of three-dimensional structures is, expected to elucidate the relationships between the retroviral capsid, protein structure and its function.
<StructureSection load='1g03' size='340' side='right'caption='[[1g03]]' scene=''>
== Structural highlights ==
<table><tr><td colspan='2'>[[1g03]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Human_T-cell_leukemia_virus_type_I Human T-cell leukemia virus type I]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1G03 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1G03 FirstGlance]. <br>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1g03 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1g03 OCA], [https://pdbe.org/1g03 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1g03 RCSB], [https://www.ebi.ac.uk/pdbsum/1g03 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1g03 ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/GAG_HTL1M GAG_HTL1M] Matrix protein p19 targets Gag, Gag-Pro and Gag-Pro-Pol polyproteins to the plasma membrane via a multipartite membrane binding signal, that includes its myristoylated N-terminus. Also mediates nuclear localization of the preintegration complex (By similarity). Capsid protein p24 forms the conical core of the virus that encapsulates the genomic RNA-nucleocapsid complex (By similarity).  Nucleocapsid protein p15 is involved in the packaging and encapsidation of two copies of the genome (By similarity).
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/g0/1g03_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1g03 ConSurf].
<div style="clear:both"></div>


==About this Structure==
==See Also==
1G03 is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Human_t-lymphotropic_virus_1 Human t-lymphotropic virus 1]. Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1G03 OCA].
*[[Virus coat proteins 3D structures|Virus coat proteins 3D structures]]
 
__TOC__
==Reference==
</StructureSection>
Structural analysis of the N-terminal domain of the human T-cell leukemia virus capsid protein., Cornilescu CC, Bouamr F, Yao X, Carter C, Tjandra N, J Mol Biol. 2001 Mar 2;306(4):783-97. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=11243788 11243788]
[[Category: Human T-cell leukemia virus type I]]
[[Category: Human t-lymphotropic virus 1]]
[[Category: Large Structures]]
[[Category: Single protein]]
[[Category: Bouamr F]]
[[Category: Bouamr, F.]]
[[Category: Carter C]]
[[Category: Carter, C.]]
[[Category: Cornilescu CC]]
[[Category: Cornilescu, C.]]
[[Category: Tjandra N]]
[[Category: Tjandra, N.]]
[[Category: Yao X]]
[[Category: Yao, X.]]
[[Category: beta hairpin loop]]
[[Category: helix core]]
 
''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Tue Nov 20 15:34:27 2007''

Latest revision as of 14:18, 27 March 2024

NMR STRUCTURE OF N-TERMINAL DOMAIN OF HTLV-I CA1-134NMR STRUCTURE OF N-TERMINAL DOMAIN OF HTLV-I CA1-134

Structural highlights

1g03 is a 1 chain structure with sequence from Human T-cell leukemia virus type I. Full experimental information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:Solution NMR
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

GAG_HTL1M Matrix protein p19 targets Gag, Gag-Pro and Gag-Pro-Pol polyproteins to the plasma membrane via a multipartite membrane binding signal, that includes its myristoylated N-terminus. Also mediates nuclear localization of the preintegration complex (By similarity). Capsid protein p24 forms the conical core of the virus that encapsulates the genomic RNA-nucleocapsid complex (By similarity). Nucleocapsid protein p15 is involved in the packaging and encapsidation of two copies of the genome (By similarity).

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

See Also

Drag the structure with the mouse to rotate

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