1f2d: Difference between revisions

← Older edit

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

@@ Line 1: / Line 1: @@
-{{Seed}}
-[[Image:1f2d.png|left|200px]]
-<!--
+==1-AMINOCYCLOPROPANE-1-CARBOXYLATE DEAMINASE==
-The line below this paragraph, containing "STRUCTURE_1f2d", creates the "Structure Box" on the page.
+<StructureSection load='1f2d' size='340' side='right'caption='[[1f2d]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[1f2d]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Cyberlindnera_saturnus Cyberlindnera saturnus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1F2D OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1F2D FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
--->
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PLP:PYRIDOXAL-5-PHOSPHATE'>PLP</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-{{STRUCTURE_1f2d|  PDB=1f2d  |  SCENE=  }}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1f2d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1f2d OCA], [https://pdbe.org/1f2d PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1f2d RCSB], [https://www.ebi.ac.uk/pdbsum/1f2d PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1f2d ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/1A1D_CYBSA 1A1D_CYBSA] Catalyzes a cyclopropane ring-opening reaction, the irreversible conversion of 1-aminocyclopropane-1-carboxylate (ACC) to ammonia and alpha-ketobutyrate.
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/f2/1f2d_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1f2d ConSurf].
+<div style="clear:both"></div>
-===1-AMINOCYCLOPROPANE-1-CARBOXYLATE DEAMINASE===
+==See Also==
+*[[Deaminase 3D structures|Deaminase 3D structures]]
+__TOC__
-<!--
+</StructureSection>
-The line below this paragraph, {{ABSTRACT_PUBMED_10938279}}, adds the Publication Abstract to the page
+[[Category: Cyberlindnera saturnus]]
-(as it appears on PubMed at http://www.pubmed.gov), where 10938279 is the PubMed ID number.
+[[Category: Large Structures]]
--->
+[[Category: Honma M]]
-{{ABSTRACT_PUBMED_10938279}}
+[[Category: Horiuchi A]]
+[[Category: Murakami T]]
-==About this Structure==
+[[Category: Nakagawa A]]
-F2D is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Williopsis_saturnus Williopsis saturnus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1F2D OCA].
+[[Category: Ose T]]
+[[Category: Sugimoto H]]
-==Reference==
+[[Category: Tanaka I]]
-Crystal structure of 1-aminocyclopropane-1-carboxylate deaminase from Hansenula saturnus., Yao M, Ose T, Sugimoto H, Horiuchi A, Nakagawa A, Wakatsuki S, Yokoi D, Murakami T, Honma M, Tanaka I, J Biol Chem. 2000 Nov 3;275(44):34557-65. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/10938279 10938279]
+[[Category: Wakatsuki S]]
-[[Category: 1-aminocyclopropane-1-carboxylate deaminase]]
+[[Category: Yao M]]
-[[Category: Single protein]]
+[[Category: Yokoi D]]
-[[Category: Williopsis saturnus]]
-[[Category: Honma, M.]]
-[[Category: Horiuchi, A.]]
-[[Category: Murakami, T.]]
-[[Category: Nakagawa, A.]]
-[[Category: Ose, T.]]
-[[Category: Sugimoto, H.]]
-[[Category: Tanaka, I.]]
-[[Category: Wakatsuki, S.]]
-[[Category: Yao, M.]]
-[[Category: Yokoi, D.]]
-[[Category: Carbon-carbon lyase]]
-[[Category: Open twisted alpha/beta]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Jul  1 02:22:35 2008''