1ej7: Difference between revisions

← Older edit

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

@@ Line 1: / Line 1: @@
-{{Seed}}
-[[Image:1ej7.png|left|200px]]
-<!--
+==CRYSTAL STRUCTURE OF UNACTIVATED TOBACCO RUBISCO WITH BOUND PHOSPHATE IONS==
-The line below this paragraph, containing "STRUCTURE_1ej7", creates the "Structure Box" on the page.
+<StructureSection load='1ej7' size='340' side='right'caption='[[1ej7]], [[Resolution|resolution]] 2.45&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[1ej7]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Nicotiana_tabacum Nicotiana tabacum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1EJ7 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1EJ7 FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.45&#8491;</td></tr>
--->
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
-{{STRUCTURE_1ej7|  PDB=1ej7  |  SCENE=  }}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ej7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ej7 OCA], [https://pdbe.org/1ej7 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ej7 RCSB], [https://www.ebi.ac.uk/pdbsum/1ej7 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ej7 ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/RBS_TOBAC RBS_TOBAC] RuBisCO catalyzes two reactions: the carboxylation of D-ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site.
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ej/1ej7_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1ej7 ConSurf].
+<div style="clear:both"></div>
-===CRYSTAL STRUCTURE OF UNACTIVATED TOBACCO RUBISCO WITH BOUND PHOSPHATE IONS===
+==See Also==
+*[[RuBisCO 3D structures|RuBisCO 3D structures]]
+__TOC__
-<!--
+</StructureSection>
-The line below this paragraph, {{ABSTRACT_PUBMED_10801357}}, adds the Publication Abstract to the page
+[[Category: Large Structures]]
-(as it appears on PubMed at http://www.pubmed.gov), where 10801357 is the PubMed ID number.
--->
-{{ABSTRACT_PUBMED_10801357}}
-==About this Structure==
-EJ7 is a [[Protein complex]] structure of sequences from [http://en.wikipedia.org/wiki/Nicotiana_tabacum Nicotiana tabacum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1EJ7 OCA].
-==Reference==
-The transition between the open and closed states of rubisco is triggered by the inter-phosphate distance of the bound bisphosphate., Duff AP, Andrews TJ, Curmi PM, J Mol Biol. 2000 May 19;298(5):903-16. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/10801357 10801357]
 [[Category: Nicotiana tabacum]]
-[[Category: Protein complex]]
+[[Category: Andrews TJ]]
-[[Category: Ribulose-bisphosphate carboxylase]]
+[[Category: Curmi PMG]]
-[[Category: Andrews, T J.]]
+[[Category: Duff AP]]
-[[Category: Curmi, P M.G.]]
-[[Category: Duff, A P.]]
-[[Category: Alpha/beta barrel]]
-[[Category: Tim barrel]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Jul  1 00:49:51 2008''