1dvv: Difference between revisions

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-{{Seed}}
-[[Image:1dvv.png|left|200px]]
-<!--
+==SOLUTION STRUCTURE OF THE QUINTUPLE MUTANT OF CYTOCHROME C-551 FROM PSEUDOMONAS AERUGINOSA==
-The line below this paragraph, containing "STRUCTURE_1dvv", creates the "Structure Box" on the page.
+<StructureSection load='1dvv' size='340' side='right'caption='[[1dvv]]' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[1dvv]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_aeruginosa Pseudomonas aeruginosa]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DVV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1DVV FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
--->
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene></td></tr>
-{{STRUCTURE_1dvv|  PDB=1dvv  |  SCENE=  }}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1dvv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1dvv OCA], [https://pdbe.org/1dvv PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1dvv RCSB], [https://www.ebi.ac.uk/pdbsum/1dvv PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1dvv ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/CY551_PSEAE CY551_PSEAE] Electron donor for cytochrome cd1 in nitrite and nitrate respiration.
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dv/1dvv_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1dvv ConSurf].
+<div style="clear:both"></div>
-===SOLUTION STRUCTURE OF THE QUINTUPLE MUTANT OF CYTOCHROME C-551 FROM PSEUDOMONAS AERUGINOSA===
+==See Also==
+*[[Cytochrome C 3D structures|Cytochrome C 3D structures]]
+__TOC__
-<!--
+</StructureSection>
-The line below this paragraph, {{ABSTRACT_PUBMED_10918067}}, adds the Publication Abstract to the page
+[[Category: Large Structures]]
-(as it appears on PubMed at http://www.pubmed.gov), where 10918067 is the PubMed ID number.
--->
-{{ABSTRACT_PUBMED_10918067}}
-==About this Structure==
-DVV is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Pseudomonas_aeruginosa Pseudomonas aeruginosa]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DVV OCA].
-==Reference==
-Selected mutations in a mesophilic cytochrome c confer the stability of a thermophilic counterpart., Hasegawa J, Uchiyama S, Tanimoto Y, Mizutani M, Kobayashi Y, Sambongi Y, Igarashi Y, J Biol Chem. 2000 Dec 1;275(48):37824-8. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/10918067 10918067]
 [[Category: Pseudomonas aeruginosa]]
-[[Category: Single protein]]
+[[Category: Hasegawa J]]
-[[Category: Hasegawa, J.]]
+[[Category: Igarashi Y]]
-[[Category: Igarashi, Y.]]
+[[Category: Kobayashi Y]]
-[[Category: Kobayashi, Y.]]
+[[Category: Mizutani M]]
-[[Category: Mizutani, M.]]
+[[Category: Sambongi Y]]
-[[Category: Sambongi, Y.]]
+[[Category: Tanimoto Y]]
-[[Category: Tanimoto, Y.]]
+[[Category: Uchiyama S]]
-[[Category: Uchiyama, S.]]
-[[Category: Cytochrome c]]
-[[Category: Stability]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Jun 30 23:41:58 2008''