1de1: Difference between revisions

← Older edit

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

@@ Line 1: / Line 1: @@
-[[Image:1de1.jpg|left|200px]]
-<!--
+==NMR STRUCTURES OF OXIDIZED BACTERIOPHAGE T4 GLUTAREDOXIN==
-The line below this paragraph, containing "STRUCTURE_1de1", creates the "Structure Box" on the page.
+<StructureSection load='1de1' size='340' side='right'caption='[[1de1]]' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[1de1]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_virus_T4 Escherichia virus T4]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DE1 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1DE1 FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
--->
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1de1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1de1 OCA], [https://pdbe.org/1de1 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1de1 RCSB], [https://www.ebi.ac.uk/pdbsum/1de1 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1de1 ProSAT]</span></td></tr>
-{{STRUCTURE_1de1|  PDB=1de1  |  SCENE=  }}
+</table>
+== Function ==
-'''NMR STRUCTURES OF OXIDIZED BACTERIOPHAGE T4 GLUTAREDOXIN'''
+[https://www.uniprot.org/uniprot/GLRX_BPT4 GLRX_BPT4] Serves as a reducing agent for the phage-induced ribonucleotide reductase, but not for the bacterial ones. This specificity may be the result of sequence differences around the redox-active disulfide bond. The oxidized form accepts electrons from bacterial glutathione and will, in turn, reduce other small disulfides. Can also be reduced by NADPH and by bacterial thioredoxin reductase.<ref>PMID:8440680</ref>
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
-==About this Structure==
+Check<jmol>
-DE1 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Enterobacteria_phage_t4 Enterobacteria phage t4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DE1 OCA].
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/de/1de1_consurf.spt"</scriptWhenChecked>
-==Reference==
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-Solution structures of reduced and oxidized bacteriophage T4 glutaredoxin., Wang Y, Amegbey G, Wishart DS, J Biomol NMR. 2004 May;29(1):85-90. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/15017142 15017142]
+    <text>to colour the structure by Evolutionary Conservation</text>
-[[Category: Enterobacteria phage t4]]
+  </jmolCheckbox>
-[[Category: Single protein]]
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1de1 ConSurf].
-[[Category: Amegbey, G.]]
+<div style="clear:both"></div>
-[[Category: Wang, Y.]]
+== References ==
-[[Category: Wishart, D S.]]
+<references/>
-[[Category: Glutaredoxin]]
+__TOC__
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Fri May  2 13:44:49 2008''
+</StructureSection>
+[[Category: Escherichia virus T4]]
+[[Category: Large Structures]]
+[[Category: Amegbey G]]
+[[Category: Wang Y]]
+[[Category: Wishart DS]]