5bvq: Difference between revisions

From Proteopedia
Jump to navigation Jump to search
← Older edit
No edit summary
No edit summary
 
(3 intermediate revisions by the same user not shown)
Line 1: Line 1:
==Ligand-unbound pFABP4==
==Ligand-unbound pFABP4==
<StructureSection load='5bvq' size='340' side='right' caption='[[5bvq]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
<StructureSection load='5bvq' size='340' side='right'caption='[[5bvq]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[5bvq]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5BVQ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5BVQ FirstGlance]. <br>
<table><tr><td colspan='2'>[[5bvq]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Pygoscelis_papua Pygoscelis papua]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5BVQ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5BVQ FirstGlance]. <br>
</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5bvs|5bvs]], [[5bvt|5bvt]]</td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1&#8491;</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5bvq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5bvq OCA], [http://pdbe.org/5bvq PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5bvq RCSB], [http://www.ebi.ac.uk/pdbsum/5bvq PDBsum]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5bvq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5bvq OCA], [https://pdbe.org/5bvq PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5bvq RCSB], [https://www.ebi.ac.uk/pdbsum/5bvq PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5bvq ProSAT]</span></td></tr>
</table>
</table>
<div style="background-color:#fffaf0;">
== Function ==
== Publication Abstract from PubMed ==
[https://www.uniprot.org/uniprot/FABP4_PYGPA FABP4_PYGPA]
Fatty acid-binding proteins (FABPs) are involved in transporting hydrophobic fatty acids between various aqueous compartments of the cell by directly binding ligands inside their beta-barrel cavities. Here, we report the crystal structures of ligand-unbound pFABP4, linoleate-bound pFABP4, and palmitate-bound pFABP5, obtained from gentoo penguin (Pygoscelis papua), at a resolution of 2.1 A, 2.2 A, and 2.3 A, respectively. The pFABP4 and pFABP5 proteins have a canonical beta-barrel structure with two short alpha-helices that form a cap region and fatty acid ligand binding sites in the hydrophobic cavity within the beta-barrel structure. Linoleate-bound pFABP4 and palmitate-bound pFABP5 possess different ligand-binding modes and a unique ligand-binding pocket due to several sequence dissimilarities (A76/L78, T30/M32, underlining indicates pFABP4 residues) between the two proteins. Structural comparison revealed significantly different conformational changes in the beta3-beta4 loop region (residues 57-62) as well as the flipped Phe60 residue of pFABP5 than that in pFABP4 (the corresponding residue is Phe58). A ligand-binding study using fluorophore displacement assays shows that pFABP4 has a relatively strong affinity for linoleate as compared to pFABP5. In contrast, pFABP5 exhibits higher affinity for palmitate than that for pFABP4. In conclusion, our high-resolution structures and ligand-binding studies provide useful insights into the ligand-binding preferences of pFABPs based on key protein-ligand interactions.
 
Structural basis for the ligand-binding specificity of fatty acid-binding proteins (pFABP4 and pFABP5) in gentoo penguin.,Lee CW, Kim JE, Do H, Kim RO, Lee SG, Park HH, Chang JH, Yim JH, Park H, Kim IC, Lee JH Biochem Biophys Res Commun. 2015 Jul 20. pii: S0006-291X(15)30317-X. doi:, 10.1016/j.bbrc.2015.07.087. PMID:26206084<ref>PMID:26206084</ref>


From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
==See Also==
</div>
*[[Fatty acid-binding protein 3D structures|Fatty acid-binding protein 3D structures]]
<div class="pdbe-citations 5bvq" style="background-color:#fffaf0;"></div>
== References ==
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Do, H]]
[[Category: Large Structures]]
[[Category: Lee, C W]]
[[Category: Pygoscelis papua]]
[[Category: Lee, J H]]
[[Category: Do H]]
[[Category: Beta-barrel protein]]
[[Category: Lee CW]]
[[Category: Fatty acid-binding protein]]
[[Category: Lee JH]]
[[Category: Lipid binding protein]]

Latest revision as of 12:08, 20 March 2024

Ligand-unbound pFABP4Ligand-unbound pFABP4

Structural highlights

5bvq is a 2 chain structure with sequence from Pygoscelis papua. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 2.1Å
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

FABP4_PYGPA

See Also

5bvq, resolution 2.10Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA
Retrieved from "https://proteopedia.openfox.io/wiki/index.php?title=5bvq&oldid=4105832"