4rm0: Difference between revisions

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<StructureSection load='4rm0' size='340' side='right'caption='[[4rm0]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
<StructureSection load='4rm0' size='340' side='right'caption='[[4rm0]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[4rm0]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Norovirus_nlv/if1998/2003/iraq Norovirus nlv/if1998/2003/iraq]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4RM0 OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=4RM0 FirstGlance]. <br>
<table><tr><td colspan='2'>[[4rm0]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Norovirus_NLV/IF1998/2003/Iraq Norovirus NLV/IF1998/2003/Iraq]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4RM0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4RM0 FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FUC:ALPHA-L-FUCOSE'>FUC</scene>, <scene name='pdbligand=GAL:BETA-D-GALACTOSE'>GAL</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=NDG:2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE'>NDG</scene></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.999&#8491;</td></tr>
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4rlz|4rlz]]</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FUC:ALPHA-L-FUCOSE'>FUC</scene>, <scene name='pdbligand=GAL:BETA-D-GALACTOSE'>GAL</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=NDG:2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE'>NDG</scene>, <scene name='pdbligand=PRD_900129:Lewis+A+antigen,+beta+anomer'>PRD_900129</scene>, <scene name='pdbligand=PRD_900130:Lewis+A+antigen,+alpha+anomer'>PRD_900130</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=4rm0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4rm0 OCA], [http://pdbe.org/4rm0 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4rm0 RCSB], [http://www.ebi.ac.uk/pdbsum/4rm0 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4rm0 ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4rm0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4rm0 OCA], [https://pdbe.org/4rm0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4rm0 RCSB], [https://www.ebi.ac.uk/pdbsum/4rm0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4rm0 ProSAT]</span></td></tr>
</table>
</table>
<div style="background-color:#fffaf0;">
== Function ==
== Publication Abstract from PubMed ==
[https://www.uniprot.org/uniprot/Q6B7R3_9CALI Q6B7R3_9CALI]
Norovirus (NoV) causes epidemic acute gastroenteritis in humans, whereby histo-blood group antigens (HBGAs) play an important role in host susceptibility. Each of the two major genogroups (GI and GII) of human NoVs recognizes a unique set of HBGAs through a distinct binding interface that is conserved within a genogroup, indicating a distinct evolutionary path for each genogroup. Here, we characterize a Lewis a (Lea) antigen binding strain (OIF virus) in the GII.21 genotype that does not share the conserved GII binding interface, revealing a new evolution lineage with a distinct HBGA binding interface. Sequence alignment showed that the major residues contributing to the new HBGA binding interface are conserved among most members of the GII.21, as well as a closely related GII.13 genotype. In addition, we found that glycerol inhibits OIF binding to HBGAs, potentially allowing production of cheap antivirals against human NoVs. Taken together, our results reveal a new evolutionary lineage of NoVs selected by HBGAs, a finding that is important for understanding the diversity and widespread nature of NoVs.


A Unique Human Norovirus Lineage with a Distinct HBGA Binding Interface.,Liu W, Chen Y, Jiang X, Xia M, Yang Y, Tan M, Li X, Rao Z PLoS Pathog. 2015 Jul 6;11(7):e1005025. doi: 10.1371/journal.ppat.1005025., eCollection 2015 Jul. PMID:26147716<ref>PMID:26147716</ref>
==See Also==
 
*[[Virus coat proteins 3D structures|Virus coat proteins 3D structures]]
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
<div class="pdbe-citations 4rm0" style="background-color:#fffaf0;"></div>
== References ==
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Large Structures]]
[[Category: Norovirus nlv/if1998/2003/iraq]]
[[Category: Norovirus NLV/IF1998/2003/Iraq]]
[[Category: Chen, Y]]
[[Category: Chen Y]]
[[Category: Jiang, X]]
[[Category: Jiang X]]
[[Category: Li, X]]
[[Category: Li X]]
[[Category: Liu, W]]
[[Category: Liu W]]
[[Category: Rao, Z]]
[[Category: Rao Z]]
[[Category: Tan, M]]
[[Category: Tan M]]
[[Category: Xia, M]]
[[Category: Xia M]]
[[Category: Hbga]]
[[Category: Mixed alpha/beta]]
[[Category: Receptor binding]]
[[Category: Viral protein]]
[[Category: Virus caspid]]

Latest revision as of 11:59, 20 March 2024

Crystal structure of Norovirus OIF P domain in complex with Lewis a trisaccharideCrystal structure of Norovirus OIF P domain in complex with Lewis a trisaccharide

Structural highlights

4rm0 is a 2 chain structure with sequence from Norovirus NLV/IF1998/2003/Iraq. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 1.999Å
Ligands:, , , , ,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

Q6B7R3_9CALI

See Also

4rm0, resolution 2.00Å

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