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==Crystal structure of DNA duplex containing consecutive T-T mispairs (Br-derivative)==
==Crystal structure of DNA duplex containing consecutive T-T mispairs (Br-derivative)==
<StructureSection load='4l26' size='340' side='right' caption='[[4l26]], [[Resolution|resolution]] 1.40&Aring;' scene=''>
<StructureSection load='4l26' size='340' side='right'caption='[[4l26]], [[Resolution|resolution]] 1.40&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[4l26]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4L26 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4L26 FirstGlance]. <br>
<table><tr><td colspan='2'>[[4l26]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4L26 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4L26 FirstGlance]. <br>
</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=CBR:5-BROMO-2-DEOXY-CYTIDINE-5-MONOPHOSPHATE'>CBR</scene></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.4&#8491;</td></tr>
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4l24|4l24]], [[4l25|4l25]]</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CBR:5-BROMO-2-DEOXY-CYTIDINE-5-MONOPHOSPHATE'>CBR</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4l26 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4l26 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4l26 RCSB], [http://www.ebi.ac.uk/pdbsum/4l26 PDBsum]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4l26 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4l26 OCA], [https://pdbe.org/4l26 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4l26 RCSB], [https://www.ebi.ac.uk/pdbsum/4l26 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4l26 ProSAT]</span></td></tr>
</table>
</table>
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
The metallo DNA duplex containing mercury-mediated T-T base pairs is an attractive biomacromolecular nanomaterial which can be applied to nanodevices such as ion sensors. Reported herein is the first crystal structure of a B-form DNA duplex containing two consecutive T-Hg(II)-T base pairs. The Hg(II) ion occupies the center between two T residues. The N3-Hg(II) bond distance is 2.0 A. The relatively short Hg(II)-Hg(II) distance (3.3 A) observed in consecutive T-Hg(II)-T base pairs suggests that the metallophilic attraction could exist between them and may stabilize the B-form double helix. To support this, the DNA duplex is largely distorted and adopts an unusual nonhelical conformation in the absence of Hg(II). The structure of the metallo DNA duplex itself and the Hg(II)-induced structural switching from the nonhelical form to the B-form provide the basis for structure-based design of metal-conjugated nucleic acid nanomaterials.
Crystal structure of metallo DNA duplex containing consecutive Watson-Crick-like T-Hg(II)-T base pairs.,Kondo J, Yamada T, Hirose C, Okamoto I, Tanaka Y, Ono A Angew Chem Int Ed Engl. 2014 Feb 24;53(9):2385-8. doi: 10.1002/anie.201309066., Epub 2014 Jan 29. PMID:24478025<ref>PMID:24478025</ref>
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
== References ==
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Hirose, C]]
[[Category: Large Structures]]
[[Category: Kondo, J]]
[[Category: Hirose C]]
[[Category: Ono, A]]
[[Category: Kondo J]]
[[Category: Tanaka, Y]]
[[Category: Ono A]]
[[Category: Yamada, T]]
[[Category: Tanaka Y]]
[[Category: A-t-t triplet]]
[[Category: Yamada T]]
[[Category: Dna]]
[[Category: Non-helical dna duplex]]
[[Category: T-t mispair]]

Latest revision as of 11:55, 20 March 2024

Crystal structure of DNA duplex containing consecutive T-T mispairs (Br-derivative)Crystal structure of DNA duplex containing consecutive T-T mispairs (Br-derivative)

Structural highlights

4l26 is a 2 chain structure. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 1.4Å
Ligands:
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

4l26, resolution 1.40Å

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OCA
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