3hd7: Difference between revisions

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-{{Seed}}
-[[Image:3hd7.jpg|left|200px]]
-<!--
+==HELICAL EXTENSION OF THE NEURONAL SNARE COMPLEX INTO THE MEMBRANE, spacegroup C 1 2 1==
-The line below this paragraph, containing "STRUCTURE_3hd7", creates the "Structure Box" on the page.
+<StructureSection load='3hd7' size='340' side='right'caption='[[3hd7]], [[Resolution|resolution]] 3.40&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[3hd7]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Rattus_norvegicus Rattus norvegicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3HD7 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3HD7 FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.4&#8491;</td></tr>
--->
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GGG:GLYCYLGLYCYLGLYCINE'>GGG</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-{{STRUCTURE_3hd7|  PDB=3hd7  |  SCENE=  }}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3hd7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3hd7 OCA], [https://pdbe.org/3hd7 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3hd7 RCSB], [https://www.ebi.ac.uk/pdbsum/3hd7 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3hd7 ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/VAMP2_RAT VAMP2_RAT] Involved in the targeting and/or fusion of transport vesicles to their target membrane (By similarity).
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/hd/3hd7_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3hd7 ConSurf].
+<div style="clear:both"></div>
-===HELICAL EXTENSION OF THE NEURONAL SNARE COMPLEX INTO THE MEMBRANE, spacegroup C 1 2 1===
+==See Also==
+*[[Synaptosomal-associated protein|Synaptosomal-associated protein]]
+*[[Syntaxin|Syntaxin]]
-<!--
+*[[Syntaxin 3D structures|Syntaxin 3D structures]]
-The line below this paragraph, {{ABSTRACT_PUBMED_19571812}}, adds the Publication Abstract to the page
+*[[Vesicle-associated membrane protein 3D structures|Vesicle-associated membrane protein 3D structures]]
-(as it appears on PubMed at http://www.pubmed.gov), where 19571812 is the PubMed ID number.
+__TOC__
--->
+</StructureSection>
-{{ABSTRACT_PUBMED_19571812}}
+[[Category: Large Structures]]
-==About this Structure==
-HD7 is a 8 chains structure of sequences from [http://en.wikipedia.org/wiki/Rattus_norvegicus Rattus norvegicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3HD7 OCA].
-==Reference==
-<ref group="xtra">PMID:19571812</ref><references group="xtra"/>
 [[Category: Rattus norvegicus]]
-[[Category: Jahn, R.]]
+[[Category: Jahn R]]
-[[Category: Stein, A.]]
+[[Category: Stein A]]
-[[Category: Wahl, M C.]]
+[[Category: Wahl MC]]
-[[Category: Weber, G.]]
+[[Category: Weber G]]
-[[Category: 4-helical bundle]]
-[[Category: Acetylation]]
-[[Category: Alternative splicing]]
-[[Category: Cell junction]]
-[[Category: Cell membrane]]
-[[Category: Coiled coil]]
-[[Category: Coiled-coil]]
-[[Category: Cytoplasm]]
-[[Category: Cytoplasmic vesicle]]
-[[Category: Exocytosis]]
-[[Category: Lipoprotein]]
-[[Category: Membrane]]
-[[Category: Membrane protein]]
-[[Category: Neurotransmitter transport]]
-[[Category: Palmitate]]
-[[Category: Phosphoprotein]]
-[[Category: Synapse]]
-[[Category: Synaptosome]]
-[[Category: Transmembrane]]
-[[Category: Transport]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jul 15 08:41:57 2009''