3ek6: Difference between revisions

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[[Image:3ek6.png|left|200px]]


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==Unique GTP-binding Pocket and Allostery of UMP Kinase from a Gram-Negative Phytopathogen Bacterium==
The line below this paragraph, containing "STRUCTURE_3ek6", creates the "Structure Box" on the page.
<StructureSection load='3ek6' size='340' side='right'caption='[[3ek6]], [[Resolution|resolution]] 2.34&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)  
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[3ek6]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Xanthomonas_campestris_pv._campestris Xanthomonas campestris pv. campestris]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3EK6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3EK6 FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.34&#8491;</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ek6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ek6 OCA], [https://pdbe.org/3ek6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ek6 RCSB], [https://www.ebi.ac.uk/pdbsum/3ek6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ek6 ProSAT]</span></td></tr>
{{STRUCTURE_3ek6| PDB=3ek6 |  SCENE= }}
</table>
== Function ==
[https://www.uniprot.org/uniprot/PYRH_XANCP PYRH_XANCP] Catalyzes the reversible phosphorylation of UMP to UDP (By similarity).
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ek/3ek6_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3ek6 ConSurf].
<div style="clear:both"></div>


===Unique GTP-binding Pocket and Allostery of UMP Kinase from a Gram-Negative Phytopathogen Bacterium===
==See Also==
 
*[[Uridylate kinase|Uridylate kinase]]
 
__TOC__
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</StructureSection>
The line below this paragraph, {{ABSTRACT_PUBMED_19059268}}, adds the Publication Abstract to the page
[[Category: Large Structures]]
(as it appears on PubMed at http://www.pubmed.gov), where 19059268 is the PubMed ID number.
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{{ABSTRACT_PUBMED_19059268}}
 
==About this Structure==
3EK6 is a 6 chains structure with sequences from [http://en.wikipedia.org/wiki/Xanthomonas_campestris_pv._campestris Xanthomonas campestris pv. campestris]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3EK6 OCA].
 
==Reference==
<ref group="xtra">PMID:19059268</ref><references group="xtra"/>
[[Category: UMP kinase]]
[[Category: Xanthomonas campestris pv. campestris]]
[[Category: Xanthomonas campestris pv. campestris]]
[[Category: Chin, K H.]]
[[Category: Chin K-H]]
[[Category: Chou, S H.]]
[[Category: Chou S-H]]
[[Category: Tu, J L.]]
[[Category: Tu J-L]]
[[Category: Wang, A H.J.]]
[[Category: Wang AH-J]]
[[Category: Allosteric regulation]]
[[Category: Atp-binding]]
[[Category: Cytoplasm]]
[[Category: Kinase]]
[[Category: Nucleotide-binding]]
[[Category: Pyrimidine biosynthesis]]
[[Category: Transferase]]
[[Category: Umpk crystal structure]]
[[Category: Unique gtp binding site]]
[[Category: Xanthomonas campestri]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Sep 22 12:05:40 2010''

Latest revision as of 11:25, 20 March 2024

Unique GTP-binding Pocket and Allostery of UMP Kinase from a Gram-Negative Phytopathogen BacteriumUnique GTP-binding Pocket and Allostery of UMP Kinase from a Gram-Negative Phytopathogen Bacterium

Structural highlights

3ek6 is a 6 chain structure with sequence from Xanthomonas campestris pv. campestris. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 2.34Å
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

PYRH_XANCP Catalyzes the reversible phosphorylation of UMP to UDP (By similarity).

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

See Also

3ek6, resolution 2.34Å

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OCA
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