3don: Difference between revisions

From Proteopedia
Jump to navigation Jump to search
← Older edit
No edit summary
No edit summary
 
(8 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{Seed}}
[[Image:3don.jpg|left|200px]]


<!--
==Crystal structure of shikimate dehydrogenase from Staphylococcus epidermidis==
The line below this paragraph, containing "STRUCTURE_3don", creates the "Structure Box" on the page.
<StructureSection load='3don' size='340' side='right'caption='[[3don]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[3don]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Staphylococcus_epidermidis_RP62A Staphylococcus epidermidis RP62A]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DON OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DON FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
{{STRUCTURE_3don|  PDB=3don |  SCENE= }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3don FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3don OCA], [https://pdbe.org/3don PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3don RCSB], [https://www.ebi.ac.uk/pdbsum/3don PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3don ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/AROE_STAEQ AROE_STAEQ]
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/do/3don_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3don ConSurf].
<div style="clear:both"></div>


===Crystal structure of shikimate dehydrogenase from Staphylococcus epidermidis===
==See Also==
 
*[[Shikimate dehydrogenase 3D structures|Shikimate dehydrogenase 3D structures]]
 
__TOC__
<!--
</StructureSection>
The line below this paragraph, {{ABSTRACT_PUBMED_19215302}}, adds the Publication Abstract to the page
[[Category: Large Structures]]
(as it appears on PubMed at http://www.pubmed.gov), where 19215302 is the PubMed ID number.
[[Category: Staphylococcus epidermidis RP62A]]
-->
[[Category: Han C]]
{{ABSTRACT_PUBMED_19215302}}
[[Category: Hu T]]
 
[[Category: Jiang H]]
==About this Structure==
[[Category: Qu D]]
3DON is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Staphylococcus_epidermidis Staphylococcus epidermidis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DON OCA].
[[Category: Shen X]]
 
[[Category: Wu D]]
==Reference==
[[Category: Zhou J]]
<ref group="xtra">PMID:19215302</ref><references group="xtra"/>
[[Category: Shikimate dehydrogenase]]
[[Category: Staphylococcus epidermidis]]
[[Category: Han, C.]]
[[Category: Hu, T.]]
[[Category: Jiang, H.]]
[[Category: Qu, D.]]
[[Category: Shen, X.]]
[[Category: Wu, D.]]
[[Category: Zhou, J.]]
[[Category: Alpha-beta structure]]
[[Category: Amino-acid biosynthesis]]
[[Category: Aromatic amino acid biosynthesis]]
[[Category: Nadp]]
[[Category: Oxidoreductase]]
[[Category: Rossman fold]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed May  6 10:03:38 2009''

Latest revision as of 11:24, 20 March 2024

Crystal structure of shikimate dehydrogenase from Staphylococcus epidermidisCrystal structure of shikimate dehydrogenase from Staphylococcus epidermidis

Structural highlights

3don is a 1 chain structure with sequence from Staphylococcus epidermidis RP62A. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 2.1Å
Ligands:
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

AROE_STAEQ

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

See Also

3don, resolution 2.10Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA
Retrieved from "https://proteopedia.openfox.io/wiki/index.php?title=3don&oldid=4103558"