3dcm: Difference between revisions

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-{{Seed}}
-[[Image:3dcm.jpg|left|200px]]
-<!--
+==Crystal structure of the Thermotoga maritima SPOUT family RNA-methyltransferase protein Tm1570 in complex with S-adenosyl-L-methionine==
-The line below this paragraph, containing "STRUCTURE_3dcm", creates the "Structure Box" on the page.
+<StructureSection load='3dcm' size='340' side='right'caption='[[3dcm]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[3dcm]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermotoga_maritima Thermotoga maritima]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DCM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DCM FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
--->
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SAM:S-ADENOSYLMETHIONINE'>SAM</scene></td></tr>
-{{STRUCTURE_3dcm|  PDB=3dcm  |  SCENE=  }}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3dcm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dcm OCA], [https://pdbe.org/3dcm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3dcm RCSB], [https://www.ebi.ac.uk/pdbsum/3dcm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3dcm ProSAT]</span></td></tr>
+</table>
-===Crystal structure of the Thermotoga maritima SPOUT family RNA-methyltransferase protein Tm1570 in complex with S-adenosyl-L-methionine===
+== Function ==
+[https://www.uniprot.org/uniprot/Y1570_THEMA Y1570_THEMA]
+== Evolutionary Conservation ==
-==About this Structure==
+[[Image:Consurf_key_small.gif|200px|right]]
-DCM is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Thermotoga_maritima Thermotoga maritima]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DCM OCA].
+Check<jmol>
+  <jmolCheckbox>
-==Reference==
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dc/3dcm_consurf.spt"</scriptWhenChecked>
-Crystal structure of Thermotoga maritima SPOUT superfamily RNA methyltransferase Tm1570 in complex with S-adenosyl-L-methionine., Kim DJ, Kim HS, Lee SJ, Suh SW, Proteins. 2008 Sep 2;74(1):245-249. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/18831037 18831037]
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3dcm ConSurf].
+<div style="clear:both"></div>
+__TOC__
+</StructureSection>
+[[Category: Large Structures]]
 [[Category: Thermotoga maritima]]
-[[Category: Kim, D J.]]
+[[Category: Kim DJ]]
-[[Category: Kim, H S.]]
+[[Category: Kim HS]]
-[[Category: Lee, S J.]]
+[[Category: Lee SJ]]
-[[Category: Suh, S W.]]
+[[Category: Suh SW]]
-[[Category: Adomet binding]]
-[[Category: Spout mtase]]
-[[Category: Transferase]]
-[[Category: Trefoil knot]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Dec 10 15:04:45 2008''