4elv: Difference between revisions

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 ==Snapshot of the large fragment of DNA polymerase I from Thermus Aquaticus processing modified pyrimidines==
-<StructureSection load='4elv' size='340' side='right' caption='[[4elv]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
+<StructureSection load='4elv' size='340' side='right'caption='[[4elv]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[4elv]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_25104 Atcc 25104]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4ELV OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4ELV FirstGlance]. <br>
+<table><tr><td colspan='2'>[[4elv]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_aquaticus Thermus aquaticus] and [https://en.wikipedia.org/wiki/Synthetic_construct Synthetic construct]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4ELV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4ELV FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=0R7:[[(2S,5R)-5-[4-AZANYL-5-[2-(4-ETHYNYLPHENYL)ETHYNYL]-2-OXIDANYLIDENE-PYRIMIDIN-1-YL]OXOLAN-2-YL]METHOXY-OXIDANYL-PHOSPHORYL]+PHOSPHONO+HYDROGEN+PHOSPHATE'>0R7</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=PGE:TRIETHYLENE+GLYCOL'>PGE</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
-<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=0R8:[(2S,5R)-5-{4-AMINO-5-[(4-ETHYNYLPHENYL)ETHYNYL]-2-OXOPYRIMIDIN-1(2H)-YL}TETRAHYDROFURAN-2-YL]METHYL+DIHYDROGEN+PHOSPHATE'>0R8</scene></td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=0R7:[[(2S,5R)-5-[4-AZANYL-5-[2-(4-ETHYNYLPHENYL)ETHYNYL]-2-OXIDANYLIDENE-PYRIMIDIN-1-YL]OXOLAN-2-YL]METHOXY-OXIDANYL-PHOSPHORYL]+PHOSPHONO+HYDROGEN+PHOSPHATE'>0R7</scene>, <scene name='pdbligand=0R8:[(2S,5R)-5-{4-AMINO-5-[(4-ETHYNYLPHENYL)ETHYNYL]-2-OXOPYRIMIDIN-1(2H)-YL}TETRAHYDROFURAN-2-YL]METHYL+DIHYDROGEN+PHOSPHATE'>0R8</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=PGE:TRIETHYLENE+GLYCOL'>PGE</scene></td></tr>
-<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3ojs|3ojs]], [[3oju|3oju]], [[4elt|4elt]], [[4elu|4elu]]</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4elv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4elv OCA], [https://pdbe.org/4elv PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4elv RCSB], [https://www.ebi.ac.uk/pdbsum/4elv PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4elv ProSAT]</span></td></tr>
-<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">polA, pol1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=271 ATCC 25104])</td></tr>
-<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/DNA-directed_DNA_polymerase DNA-directed DNA polymerase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.7.7 2.7.7.7] </span></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4elv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4elv OCA], [http://pdbe.org/4elv PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4elv RCSB], [http://www.ebi.ac.uk/pdbsum/4elv PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4elv ProSAT]</span></td></tr>
 </table>
+== Function ==
+[https://www.uniprot.org/uniprot/DPO1_THEAQ DPO1_THEAQ]
 ==See Also==
-*[[DNA polymerase|DNA polymerase]]
+*[[DNA polymerase 3D structures|DNA polymerase 3D structures]]
 __TOC__
 </StructureSection>
-[[Category: Atcc 25104]]
+[[Category: Large Structures]]
-[[Category: DNA-directed DNA polymerase]]
+[[Category: Synthetic construct]]
-[[Category: Diederichs, K]]
+[[Category: Thermus aquaticus]]
-[[Category: Marx, A]]
+[[Category: Diederichs K]]
-[[Category: Obeid, S]]
+[[Category: Marx A]]
-[[Category: A family]]
+[[Category: Obeid S]]
-[[Category: Dna polymerase]]
-[[Category: Dna synthesis]]
-[[Category: Elongation of modified dna]]
-[[Category: Modified nucleotide]]
-[[Category: Non-natural nucleotide]]
-[[Category: Rigid linker]]
-[[Category: Transferase-dna complex]]