4dkw: Difference between revisions

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-[[Image:4dkw.png|left|200px]]
-{{STRUCTURE_4dkw|  PDB=4dkw  |  SCENE=  }}
+==Structure of P22 Large terminase nuclease domain==
+<StructureSection load='4dkw' size='340' side='right'caption='[[4dkw]], [[Resolution|resolution]] 2.02&Aring;' scene=''>
+== Structural highlights ==
+<table><tr><td colspan='2'>[[4dkw]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Salmonella_virus_P22 Salmonella virus P22]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4DKW OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4DKW FirstGlance]. <br>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.02&#8491;</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4dkw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4dkw OCA], [https://pdbe.org/4dkw PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4dkw RCSB], [https://www.ebi.ac.uk/pdbsum/4dkw PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4dkw ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/TERL_BPP22 TERL_BPP22] Component of the molecular motor that translocates genomic DNA in empty capsid during DNA packaging. Heterodimerizes with small terminase protein to be docked on capsid portal protein. The latter forms a ring in which genomic DNA in translocated into the capsid. May have or induce an endonuclease activity to cleave the genome concatemer after encapsidation (By similarity).
-===Structure of P22 Large terminase nuclease domain===
+==See Also==
+*[[Terminase 3D Structures|Terminase 3D Structures]]
-{{ABSTRACT_PUBMED_22715098}}
+__TOC__
+</StructureSection>
-==About this Structure==
+[[Category: Large Structures]]
-[[4dkw]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Enterobacteria_phage_p22 Enterobacteria phage p22]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4DKW OCA].
+[[Category: Salmonella virus P22]]
+[[Category: Cingolani G]]
-==Reference==
+[[Category: Roy A]]
-<ref group="xtra">PMID:022715098</ref><references group="xtra"/>
-[[Category: Enterobacteria phage p22]]
-[[Category: Cingolani, G.]]
-[[Category: Roy, A.]]
-[[Category: Dna]]
-[[Category: Dna-packaging]]
-[[Category: Dna-packaging motor]]
-[[Category: Endonuclease]]
-[[Category: Hydrolase]]
-[[Category: Large terminase]]
-[[Category: Nuclease fold]]
-[[Category: Small terminase]]