3v3w: Difference between revisions

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[[Image:3v3w.png|left|200px]]


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==Crystal structure of an enolase from the soil bacterium Cellvibrio japonicus (TARGET EFI-502161) with bound MG and glycerol==
The line below this paragraph, containing "STRUCTURE_3v3w", creates the "Structure Box" on the page.
<StructureSection load='3v3w' size='340' side='right'caption='[[3v3w]], [[Resolution|resolution]] 1.40&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[3v3w]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Cellvibrio_japonicus_Ueda107 Cellvibrio japonicus Ueda107]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3V3W OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3V3W FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.4&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=NHE:2-[N-CYCLOHEXYLAMINO]ETHANE+SULFONIC+ACID'>NHE</scene></td></tr>
{{STRUCTURE_3v3w|  PDB=3v3w  |  SCENE= }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3v3w FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3v3w OCA], [https://pdbe.org/3v3w PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3v3w RCSB], [https://www.ebi.ac.uk/pdbsum/3v3w PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3v3w ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/MAND_CELJU MAND_CELJU] Has low D-mannonate dehydratase activity (in vitro), suggesting that this is not a physiological substrate and that it has no significant role in D-mannonate degradation in vivo. Has no detectable activity with a panel of 70 other acid sugars (in vitro).<ref>PMID:24697546</ref>


===Crystal structure of an enolase from the soil bacterium Cellvibrio japonicus (TARGET EFI-502161) with bound MG and glycerol===
==See Also==
 
*[[Enolase 3D structures|Enolase 3D structures]]
 
== References ==
==About this Structure==
<references/>
[[3v3w]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Cellvibrio_japonicus Cellvibrio japonicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3V3W OCA].
__TOC__
[[Category: Cellvibrio japonicus]]
</StructureSection>
[[Category: Almo, S C.]]
[[Category: Cellvibrio japonicus Ueda107]]
[[Category: Bhosle, R.]]
[[Category: Large Structures]]
[[Category: Chowhurdy, S.]]
[[Category: Almo SC]]
[[Category: EFI, Enzyme Function Initiative.]]
[[Category: Bhosle R]]
[[Category: Evans, B.]]
[[Category: Chowdhury S]]
[[Category: Gerlt, J A.]]
[[Category: Evans B]]
[[Category: Glen, A Scott.]]
[[Category: Gerlt JA]]
[[Category: Hammond, J.]]
[[Category: Hammonds J]]
[[Category: Hillerich, B.]]
[[Category: Hillerich B]]
[[Category: Imker, H J.]]
[[Category: Imker HJ]]
[[Category: Morisco, L L.]]
[[Category: Morisco LL]]
[[Category: Seidel, R.]]
[[Category: Scott Glenn A]]
[[Category: Sojitra, S.]]
[[Category: Seidel R]]
[[Category: Toro, R.]]
[[Category: Sojitra S]]
[[Category: Vetting, M W.]]
[[Category: Toro R]]
[[Category: Washington, E.]]
[[Category: Vetting MW]]
[[Category: Wasserman, S R.]]
[[Category: Washington E]]
[[Category: Zencheck, W D.]]
[[Category: Wasserman SR]]
[[Category: Efi]]
[[Category: Zencheck WD]]
[[Category: Enolase]]
[[Category: Enzyme function initiative]]
[[Category: Lyase]]

Latest revision as of 17:16, 14 March 2024

Crystal structure of an enolase from the soil bacterium Cellvibrio japonicus (TARGET EFI-502161) with bound MG and glycerolCrystal structure of an enolase from the soil bacterium Cellvibrio japonicus (TARGET EFI-502161) with bound MG and glycerol

Structural highlights

3v3w is a 1 chain structure with sequence from Cellvibrio japonicus Ueda107. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 1.4Å
Ligands:, , ,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

MAND_CELJU Has low D-mannonate dehydratase activity (in vitro), suggesting that this is not a physiological substrate and that it has no significant role in D-mannonate degradation in vivo. Has no detectable activity with a panel of 70 other acid sugars (in vitro).[1]

See Also

References

  1. ↑ Wichelecki DJ, Balthazor BM, Chau AC, Vetting MW, Fedorov AA, Fedorov EV, Lukk T, Patskovsky YV, Stead MB, Hillerich BS, Seidel RD, Almo SC, Gerlt JA. Discovery of function in the enolase superfamily: D-mannonate and d-gluconate dehydratases in the D-mannonate dehydratase subgroup. Biochemistry. 2014 Apr 29;53(16):2722-31. doi: 10.1021/bi500264p. Epub 2014 Apr, 15. PMID:24697546 doi:http://dx.doi.org/10.1021/bi500264p

3v3w, resolution 1.40Å

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