3u56: Difference between revisions

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 ==Crystal structure of mutant ribosomal protein T217V TthL1 in complex with 80nt 23S RNA from Thermus thermophilus==
-<StructureSection load='3u56' size='340' side='right' caption='[[3u56]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
+<StructureSection load='3u56' size='340' side='right'caption='[[3u56]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[3u56]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/ ] and [http://en.wikipedia.org/wiki/"flavobacterium_thermophilum"_yoshida_and_oshima_1971 "flavobacterium thermophilum" yoshida and oshima 1971]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3U56 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3U56 FirstGlance]. <br>
+<table><tr><td colspan='2'>[[3u56]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3U56 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3U56 FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=MLI:MALONATE+ION'>MLI</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1&#8491;</td></tr>
-<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1u63|1u63]], [[2vpl|2vpl]], [[2hw8|2hw8]], [[1zho|1zho]], [[1mzp|1mzp]], [[3u4m|3u4m]], [[3u42|3u42]]</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=MLI:MALONATE+ION'>MLI</scene></td></tr>
-<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">rplA, rpl1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=274 "Flavobacterium thermophilum" Yoshida and Oshima 1971])</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3u56 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3u56 OCA], [https://pdbe.org/3u56 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3u56 RCSB], [https://www.ebi.ac.uk/pdbsum/3u56 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3u56 ProSAT]</span></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3u56 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3u56 OCA], [http://pdbe.org/3u56 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3u56 RCSB], [http://www.ebi.ac.uk/pdbsum/3u56 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3u56 ProSAT]</span></td></tr>
 </table>
 == Function ==
-[[http://www.uniprot.org/uniprot/RL1_THETH RL1_THETH]] The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release (By similarity). Binds directly to 23S rRNA.[HAMAP-Rule:MF_01318]  Protein L1 is also a translational repressor protein, it controls the translation of the L11 operon by binding to its mRNA (By similarity).[HAMAP-Rule:MF_01318]
+[https://www.uniprot.org/uniprot/RL1_THETH RL1_THETH] The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release (By similarity). Binds directly to 23S rRNA.[HAMAP-Rule:MF_01318]  Protein L1 is also a translational repressor protein, it controls the translation of the L11 operon by binding to its mRNA (By similarity).[HAMAP-Rule:MF_01318]
 ==See Also==
@@ Line 16: / Line 15: @@
 __TOC__
 </StructureSection>
-[[Category: Flavobacterium thermophilum yoshida and oshima 1971]]
+[[Category: Large Structures]]
-[[Category: Gabdulkhakov, A G]]
+[[Category: Thermus thermophilus]]
-[[Category: NIkonov, S V]]
+[[Category: Gabdulkhakov AG]]
-[[Category: Nevskaya, N A]]
+[[Category: NIkonov SV]]
-[[Category: L1 protuberance in the ribosome]]
+[[Category: Nevskaya NA]]
-[[Category: Ribosomal protein]]
-[[Category: Ribosome]]
-[[Category: Rna-rna binding protein complex]]
-[[Category: Rossmann fold]]
-[[Category: Rrna]]