3t3f: Difference between revisions

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[[Image:3t3f.png|left|200px]]


{{STRUCTURE_3t3f|  PDB=3t3f  |  SCENE=  }}
==Ternary Structure of the large fragment of Taq DNA polymerase bound to an abasic site and dNITP==
 
<StructureSection load='3t3f' size='340' side='right'caption='[[3t3f]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
===Ternary Structure of the large fragment of Taq DNA polymerase bound to an abasic site and dNITP===
== Structural highlights ==
 
<table><tr><td colspan='2'>[[3t3f]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_aquaticus Thermus aquaticus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3T3F OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3T3F FirstGlance]. <br>
{{ABSTRACT_PUBMED_22318723}}
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
 
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=3DR:1,2-DIDEOXYRIBOFURANOSE-5-PHOSPHATE'>3DR</scene>, <scene name='pdbligand=DOC:2,3-DIDEOXYCYTIDINE-5-MONOPHOSPHATE'>DOC</scene>, <scene name='pdbligand=FMT:FORMIC+ACID'>FMT</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=N5P:1-{2-DEOXY-5-O-[(R)-HYDROXY{[(R)-HYDROXY(PHOSPHONOOXY)PHOSPHORYL]OXY}PHOSPHORYL]-BETA-D-ERYTHRO-PENTOFURANOSYL}-5-NITRO-1H-INDOLE'>N5P</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
==About this Structure==
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3t3f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3t3f OCA], [https://pdbe.org/3t3f PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3t3f RCSB], [https://www.ebi.ac.uk/pdbsum/3t3f PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3t3f ProSAT]</span></td></tr>
[[3t3f]] is a 3 chain structure of [[DNA polymerase]] with sequence from [http://en.wikipedia.org/wiki/Thermus_aquaticus Thermus aquaticus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3T3F OCA].  
</table>
== Function ==
[https://www.uniprot.org/uniprot/DPO1_THEAQ DPO1_THEAQ]


==See Also==
==See Also==
*[[DNA polymerase|DNA polymerase]]
*[[DNA polymerase 3D structures|DNA polymerase 3D structures]]
 
__TOC__
==Reference==
</StructureSection>
<ref group="xtra">PMID:022318723</ref><references group="xtra"/>
[[Category: Large Structures]]
[[Category: DNA-directed DNA polymerase]]
[[Category: Thermus aquaticus]]
[[Category: Thermus aquaticus]]
[[Category: Diederichs, K.]]
[[Category: Diederichs K]]
[[Category: Marx, A.]]
[[Category: Marx A]]
[[Category: Obeid, S.]]
[[Category: Obeid S]]
[[Category: A-rule]]
[[Category: Abasic site]]
[[Category: Base analogue]]
[[Category: Base stacking]]
[[Category: Dna polymerase]]
[[Category: Dnitp]]
[[Category: Nitroindol triphosphate]]
[[Category: Transferase-dna complex]]
[[Category: Translesion synthesis]]

Latest revision as of 16:16, 14 March 2024

Ternary Structure of the large fragment of Taq DNA polymerase bound to an abasic site and dNITPTernary Structure of the large fragment of Taq DNA polymerase bound to an abasic site and dNITP

Structural highlights

3t3f is a 3 chain structure with sequence from Thermus aquaticus. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 1.9Å
Ligands:, , , , , ,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

DPO1_THEAQ

See Also

3t3f, resolution 1.90Å

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